Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   NH62_RS20760 Genome accession   NZ_CP012998
Coordinates   2370849..2371709 (+) Length   286 a.a.
NCBI ID   WP_001905608.1    Uniprot ID   -
Organism   Vibrio cholerae strain 2012Env-9     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2365849..2376709
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NH62_RS16165 (NH62_22136) greB 2366297..2366779 (-) 483 WP_000850492.1 transcription elongation factor GreB -
  NH62_RS16170 (NH62_22137) - 2367022..2369343 (+) 2322 WP_000030101.1 Tex family protein -
  NH62_RS16175 (NH62_22138) - 2369438..2369908 (-) 471 WP_000961393.1 hypothetical protein -
  NH62_RS16180 (NH62_22139) bioH 2370152..2370913 (-) 762 WP_001240446.1 pimeloyl-ACP methyl ester esterase BioH -
  NH62_RS20760 comF 2370849..2371709 (+) 861 WP_001905608.1 ComF family protein Machinery gene
  NH62_RS16190 (NH62_22141) nfuA 2371797..2372384 (+) 588 WP_000070181.1 Fe-S biogenesis protein NfuA -
  NH62_RS16195 (NH62_22142) nudE 2372523..2373071 (+) 549 WP_000095820.1 ADP compounds hydrolase NudE -
  NH62_RS16200 (NH62_22143) cysQ 2373094..2373921 (+) 828 WP_000106799.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  NH62_RS16205 (NH62_22144) - 2373973..2374731 (-) 759 WP_000817146.1 type II secretion system protein N -
  NH62_RS16210 (NH62_22145) - 2374733..2375230 (-) 498 WP_000661339.1 type II secretion system protein M -
  NH62_RS16215 (NH62_22146) gspL 2375240..2376451 (-) 1212 WP_001288747.1 type II secretion system protein GspL -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32559.49 Da        Isoelectric Point: 8.0588

>NTDB_id=159060 NH62_RS20760 WP_001905608.1 2370849..2371709(+) (comF) [Vibrio cholerae strain 2012Env-9]
MPQPCTNTRSCPCPLTCQYNAMVTVSPSISIFIHSANWQDEAHYPDSWLAMLTHWLRKTTAPLLTPECHLCRLALDTNSP
FGVCSACQAWLEHGYRCARCGLPTLTPVDQCGQCLGQPPPWRKLMCIGDYRFPLSDAVHQLKYQRQFWQAPRLAKLLATQ
INEPAPLLCSVPLHWRRRWQRGFNQSDLLARELANMLNVEYDHQLFARRRATPHQQGLSKAQRIHNLRDAFVLNHPPNQP
HVAIVDDVVTTGSTIRHLCDLLLDVGVQSIDIYCICRTPEPKDSHG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=159060 NH62_RS20760 WP_001905608.1 2370849..2371709(+) (comF) [Vibrio cholerae strain 2012Env-9]
ATGCCCCAGCCGTGTACCAATACCAGATCTTGCCCTTGTCCACTGACTTGCCAATACAACGCCATGGTCACAGTTTCTCC
GTCTATTTCCATCTTCATCCACTCTGCCAATTGGCAAGATGAAGCACATTACCCCGATTCTTGGCTCGCTATGTTAACCC
ATTGGCTCAGAAAAACTACCGCACCACTGCTGACTCCGGAATGTCATCTCTGTCGACTGGCACTCGATACAAATTCGCCG
TTTGGCGTCTGCTCTGCCTGCCAAGCTTGGCTTGAGCACGGTTATCGCTGCGCACGCTGCGGTTTACCGACTCTTACCCC
AGTTGATCAGTGCGGGCAGTGTTTGGGTCAGCCTCCGCCGTGGCGAAAACTGATGTGTATCGGCGATTACCGCTTTCCAC
TCAGTGATGCGGTGCATCAACTCAAATACCAACGCCAGTTTTGGCAAGCGCCGCGCTTGGCTAAGCTACTCGCCACCCAG
ATTAACGAGCCCGCCCCTTTGCTGTGCAGCGTGCCACTGCATTGGCGGCGACGCTGGCAACGCGGCTTTAATCAAAGCGA
TCTGCTGGCGCGCGAGTTAGCCAATATGCTGAACGTTGAATATGACCACCAACTCTTTGCACGCCGCCGAGCCACACCGC
ATCAACAAGGACTCAGCAAGGCGCAGCGAATCCACAACCTACGCGATGCGTTTGTGCTGAATCATCCGCCAAACCAACCA
CATGTTGCGATTGTGGACGATGTGGTGACCACAGGCAGTACGATCCGACATTTATGCGATTTACTGCTTGATGTCGGTGT
GCAAAGCATTGATATTTACTGCATATGCCGCACTCCCGAGCCGAAAGATAGCCACGGTTGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(189-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

99.65

100

0.997
  comF Vibrio campbellii strain DS40M4

47.059

83.217

0.392

Multiple sequence alignment