Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   AOB58_RS01760 Genome accession   NZ_CP012968
Coordinates   345360..347756 (+) Length   798 a.a.
NCBI ID   WP_064782872.1    Uniprot ID   -
Organism   Staphylococcus sp. AntiMn-1 isolate deep-sea sediment of east Pacific Nodule Province     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 340360..352756
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOB58_RS01740 (AOB58_320) sal 340619..342250 (+) 1632 WP_071561812.1 Sal family ABC-F type ribosomal protection protein -
  AOB58_RS01745 (AOB58_321) - 342311..343453 (+) 1143 WP_021339127.1 cysteine desulfurase family protein -
  AOB58_RS01750 (AOB58_322) mnmA 343454..344566 (+) 1113 WP_021339128.1 tRNA 2-thiouridine(34) synthase MnmA -
  AOB58_RS01755 (AOB58_323) - 344691..345356 (+) 666 WP_064782871.1 tetratricopeptide repeat protein -
  AOB58_RS01760 (AOB58_324) recD2 345360..347756 (+) 2397 WP_064782872.1 ATP-dependent RecD-like DNA helicase Machinery gene
  AOB58_RS01765 (AOB58_325) alaS 348110..350740 (+) 2631 WP_064782873.1 alanine--tRNA ligase -
  AOB58_RS01770 (AOB58_326) - 350836..351096 (+) 261 WP_002507438.1 IreB family regulatory phosphoprotein -
  AOB58_RS01775 (AOB58_327) ruvX 351100..351528 (+) 429 WP_002507439.1 Holliday junction resolvase RuvX -
  AOB58_RS01780 (AOB58_328) - 351545..351877 (+) 333 WP_002507440.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 798 a.a.        Molecular weight: 89795.67 Da        Isoelectric Point: 4.5466

>NTDB_id=158634 AOB58_RS01760 WP_064782872.1 345360..347756(+) (recD2) [Staphylococcus sp. AntiMn-1 isolate deep-sea sediment of east Pacific Nodule Province]
MEDPTLFNNSMIKGTVDAILFQNKENFYTVLKVDTIETNEDFVSMPTIVGFFPEIAEGDVYTFKGQVVTHSKYGKQLKAE
TFEKELPQTKEAIISYLSSDLFKGIGKKTAQSIVNKLGENAISDILNDPAVLEKVPSLPKKKQKQIAEQIASNQETEQII
IRLHDLGFGPKLAMAIYQAYLGETLKVVENTPYQLVYDVKGIGFNKADALARNVGIQFNDDERLKAGLLYVLEEECIKQG
HTYLPTNNVMEMTQDMLSQPPAEMVDAQQLINVLQDLVNDTKLIQQENEVAIPSLYYSELKSVQNLYRNFTHTNKLKEIE
QSELLLEIGEIENRNEVTYADSQRDALQTAINTKIMLLTGGPGTGKTTVIKGIVELYAEIHGLSLDYDDYQNDDYPVVLA
APTGRASKRLAESTGLEAMTIHRLIGWNQDTQPEDILENEISAKLIIIDEMSMVDTWLFHQFLSAVPIDAQVILVGDEDQ
LPSVGPGQVFKDLIDSKVIPRVNLTEVYRQQYGSSIIELAHRMKLGEAIDITQRFHDRNFIKCTTEQIPTVVEKVVTSAV
NKGYDMSDIQVLAPMYKGSAGIKKLNTVLQDILNPKDKDTREIEFGDVVFRKGDKVLQLVNRPSDNIFNGDIGVIVGIFW
AKENALNKDILVVDFEGNEITFVRKDLLELTHAYCTSIHKSQGSEFPIVIMPMVKQYFRMLQKPILYTGLTRAKQSLIFL
GDPQAFDIGLKTHGQVRMTQLCTFLKTYFNNEVTEDAEDSIAISKTIDADIILTEDTIFKINPMINMGDISPYDFVED

Nucleotide


Download         Length: 2397 bp        

>NTDB_id=158634 AOB58_RS01760 WP_064782872.1 345360..347756(+) (recD2) [Staphylococcus sp. AntiMn-1 isolate deep-sea sediment of east Pacific Nodule Province]
ATGGAAGACCCTACATTATTTAACAATTCAATGATTAAAGGAACCGTGGATGCTATTTTATTTCAAAATAAAGAAAATTT
TTATACGGTTTTAAAGGTAGATACAATTGAAACAAATGAAGATTTCGTTTCAATGCCTACAATTGTAGGGTTTTTCCCGG
AAATTGCTGAAGGTGATGTCTATACGTTTAAAGGCCAAGTTGTAACACATTCTAAATATGGTAAGCAACTCAAAGCTGAA
ACGTTTGAAAAAGAGTTGCCGCAAACAAAAGAAGCAATCATTAGTTATTTATCCAGCGATCTTTTTAAAGGTATTGGGAA
AAAAACTGCACAAAGTATTGTAAATAAGTTAGGCGAGAATGCCATTAGTGATATATTAAATGATCCTGCTGTTTTAGAAA
AAGTACCGAGTCTACCAAAAAAGAAACAAAAGCAAATCGCAGAACAAATCGCTAGTAATCAAGAAACAGAACAAATCATT
ATACGACTTCACGACTTAGGTTTTGGTCCGAAGCTTGCTATGGCAATATACCAAGCCTATTTAGGTGAGACACTTAAAGT
TGTTGAAAATACACCATACCAATTGGTTTATGATGTAAAAGGAATCGGTTTTAATAAAGCAGATGCTTTAGCACGTAACG
TGGGTATTCAATTTAATGATGATGAACGTCTGAAAGCTGGTTTGTTATATGTTTTAGAAGAAGAATGTATTAAACAAGGC
CATACATATTTACCTACAAATAATGTTATGGAAATGACACAAGATATGTTGTCTCAACCACCAGCAGAAATGGTTGATGC
ACAACAACTTATAAATGTATTGCAAGATTTAGTAAATGATACGAAATTAATCCAACAAGAAAATGAAGTTGCTATACCAA
GTTTGTATTATTCAGAGTTGAAAAGTGTTCAAAACTTATATCGCAATTTTACGCATACAAATAAATTAAAAGAAATTGAG
CAATCAGAATTATTGCTTGAAATTGGTGAAATAGAGAACCGTAATGAAGTAACATATGCCGACTCACAAAGAGACGCGCT
ACAAACTGCAATCAATACTAAAATCATGTTACTAACTGGTGGTCCAGGTACTGGTAAAACGACAGTAATCAAAGGTATCG
TAGAGCTATATGCAGAGATTCATGGTTTATCGTTAGACTATGATGATTACCAAAATGACGATTACCCTGTTGTGCTTGCG
GCACCTACCGGCAGAGCATCAAAGCGGCTTGCAGAATCTACAGGATTAGAAGCAATGACGATACATCGGCTCATTGGTTG
GAATCAAGATACACAACCTGAAGATATTTTAGAAAATGAAATATCTGCAAAACTTATTATTATAGATGAGATGTCGATGG
TTGATACATGGCTTTTTCATCAGTTTTTGAGTGCAGTACCTATAGACGCACAAGTTATATTAGTAGGTGATGAAGATCAA
TTACCATCTGTTGGTCCTGGACAAGTGTTTAAAGATTTAATCGATTCAAAAGTTATCCCACGTGTCAATTTAACTGAAGT
ATACCGCCAACAATACGGTTCTAGTATTATTGAGTTGGCACATAGAATGAAATTGGGCGAAGCAATTGATATTACACAGC
GTTTCCATGATCGTAACTTTATCAAATGTACGACTGAACAAATACCCACAGTAGTTGAAAAAGTAGTGACAAGTGCAGTA
AATAAAGGATATGACATGAGTGATATTCAGGTATTAGCACCTATGTATAAAGGTTCCGCAGGTATTAAAAAACTAAATAC
GGTCTTGCAAGATATATTGAACCCTAAAGACAAAGATACTCGAGAAATTGAGTTTGGTGATGTTGTTTTTAGAAAAGGAG
ATAAGGTTTTACAACTTGTGAACCGACCAAGTGATAATATTTTTAATGGTGATATCGGTGTAATCGTAGGTATATTTTGG
GCGAAAGAAAATGCATTAAATAAAGACATACTTGTCGTTGATTTTGAGGGCAATGAAATAACGTTTGTTCGAAAAGATTT
ATTAGAATTAACACATGCATATTGCACATCTATTCATAAGTCTCAGGGTTCTGAGTTTCCTATAGTCATCATGCCAATGG
TCAAGCAATATTTTAGAATGTTACAAAAACCTATTTTATATACAGGGCTTACTCGAGCGAAGCAGTCGCTCATATTTTTA
GGTGACCCACAAGCATTTGATATTGGATTGAAAACACACGGTCAAGTGAGAATGACACAATTATGTACATTTCTGAAAAC
TTATTTCAATAACGAAGTAACTGAAGATGCTGAAGATAGTATTGCAATCAGTAAAACAATTGATGCAGATATCATATTGA
CTGAAGATACTATCTTTAAAATTAACCCTATGATCAACATGGGAGACATTTCACCATATGACTTTGTAGAAGATTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(339-545)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(672-718)

Helix-hairpin-helix containing domain (HHH_RecD2)

(153-243)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(585-655)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

50

100

0.5

Multiple sequence alignment