Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   AEI16_RS06675 Genome accession   NZ_CP012957
Coordinates   1269348..1269863 (-) Length   171 a.a.
NCBI ID   WP_002867318.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CJ001CC354     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1264348..1274863
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AEI16_RS06660 (AEI16_06625) - 1264451..1266268 (-) 1818 WP_125975170.1 motility associated factor glycosyltransferase family protein -
  AEI16_RS06665 (AEI16_06630) - 1266265..1268097 (-) 1833 WP_260627606.1 motility associated factor glycosyltransferase family protein -
  AEI16_RS06670 (AEI16_06635) - 1268107..1269348 (-) 1242 WP_044260698.1 DUF2920 family protein -
  AEI16_RS06675 (AEI16_06640) ctsG 1269348..1269863 (-) 516 WP_002867318.1 type II secretion system protein Machinery gene
  AEI16_RS06680 (AEI16_06645) tsaD 1269864..1270871 (-) 1008 WP_002867317.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  AEI16_RS06685 (AEI16_06650) - 1270868..1272262 (-) 1395 WP_002867316.1 M99 family carboxypeptidase catalytic domain-containing protein -
  AEI16_RS06690 (AEI16_06655) dxr 1272264..1273334 (-) 1071 WP_002867315.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  AEI16_RS06695 (AEI16_06660) cdsA 1273331..1274056 (-) 726 WP_002867314.1 phosphatidate cytidylyltransferase -
  AEI16_RS06700 (AEI16_06665) - 1274065..1274403 (-) 339 WP_002852397.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18706.57 Da        Isoelectric Point: 6.4683

>NTDB_id=158560 AEI16_RS06675 WP_002867318.1 1269348..1269863(-) (ctsG) [Campylobacter jejuni strain CJ001CC354]
MRKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLSN
FNGIKEVNFRVGDDKECLKLVFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=158560 AEI16_RS06675 WP_002867318.1 1269348..1269863(-) (ctsG) [Campylobacter jejuni strain CJ001CC354]
ATGAGAAAAGCTTTTACTATATTAGAACTTGTTTTTGTGATTGTTATTTTAGGAATTTTAGCCGCTATTGCTTTGCCAAA
AATGAGTTCAAGTAAGGATGAAGCTGAAGTTAGCAAGTCTTTAAACAACCTTAAAACTTTGATCAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGTGGGGTTGAAAATGTTGATCTTAGTAAT
TTTAACGGTATAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAGAATGCTTAAAACTTGTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGCTATCATCAACGCAGCTAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGTGTGATTTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

94.737

100

0.947

Multiple sequence alignment