Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   FORC23_RS14395 Genome accession   NZ_CP012950
Coordinates   3105219..3105944 (+) Length   241 a.a.
NCBI ID   WP_025508705.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain FORC_023 isolate 378     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3100219..3110944
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC23_RS14380 (FORC23_2693) - 3101322..3103643 (+) 2322 WP_025508777.1 Tex family protein -
  FORC23_RS14385 (FORC23_2694) - 3103779..3104243 (-) 465 WP_005459035.1 hypothetical protein -
  FORC23_RS14390 (FORC23_2695) bioH 3104367..3105134 (-) 768 WP_070226102.1 pimeloyl-ACP methyl ester esterase BioH -
  FORC23_RS14395 (FORC23_2696) comF 3105219..3105944 (+) 726 WP_025508705.1 ComF family protein Machinery gene
  FORC23_RS14400 (FORC23_2697) nfuA 3106042..3106626 (+) 585 WP_005458964.1 Fe-S biogenesis protein NfuA -
  FORC23_RS14405 (FORC23_2698) nudE 3106847..3107416 (+) 570 WP_005459019.1 ADP compounds hydrolase NudE -
  FORC23_RS14410 (FORC23_2699) cysQ 3107458..3108285 (+) 828 WP_005458987.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  FORC23_RS14415 (FORC23_2700) - 3108572..3109333 (-) 762 WP_025535418.1 type II secretion system protein N -
  FORC23_RS14420 (FORC23_2701) - 3109335..3109826 (-) 492 WP_005458943.1 type II secretion system protein M -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27740.88 Da        Isoelectric Point: 8.9991

>NTDB_id=158493 FORC23_RS14395 WP_025508705.1 3105219..3105944(+) (comF) [Vibrio parahaemolyticus strain FORC_023 isolate 378]
MLSHHWQNIMHRVLSSQCGLCRFPIQAAAQPNALRWCDHCYQYLTPVKRCQRCGLSLKAEEANIESICGECLSEPPPWQR
LFTLGDYDFPLSREVQRFKDHGQTWHVRALTQLLAQRISTPAPLITTVPLHWQRYFYRGFNQSDILARHLAGHLNVRFDN
HVFRRVKHVQSQRGYKKSSREQNLKGAFTLNQPPKYNHVAIVDDVVTTGSTVRQLCHLLLEVGVETVDIYCICRTPAPGA
V

Nucleotide


Download         Length: 726 bp        

>NTDB_id=158493 FORC23_RS14395 WP_025508705.1 3105219..3105944(+) (comF) [Vibrio parahaemolyticus strain FORC_023 isolate 378]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGTGTGCTCAGCAGTCAATGCGGTTTATGTCGCTTCCCGATTCAGGC
TGCCGCTCAACCCAATGCGCTGCGTTGGTGTGATCACTGTTATCAATATCTTACGCCAGTAAAACGCTGCCAACGTTGTG
GATTGAGCTTAAAAGCAGAGGAAGCGAATATAGAGAGTATTTGCGGCGAGTGCCTCTCCGAGCCTCCACCGTGGCAACGG
CTATTTACCTTGGGAGACTACGATTTTCCGCTGTCTCGAGAAGTACAACGCTTCAAAGATCACGGACAAACATGGCATGT
TCGCGCTTTAACGCAATTGCTTGCCCAACGCATTTCAACTCCCGCTCCGCTTATCACCACAGTGCCATTGCACTGGCAAC
GCTACTTTTATCGAGGCTTTAATCAGAGCGACATACTGGCGCGACATTTGGCTGGTCACCTTAATGTGAGGTTTGATAAT
CACGTGTTTCGCCGCGTAAAACACGTCCAGTCGCAGCGTGGGTACAAGAAATCCAGCCGAGAACAGAATTTAAAAGGCGC
TTTCACCTTAAATCAGCCACCAAAGTATAACCACGTCGCAATCGTAGATGATGTGGTCACGACGGGAAGCACGGTTCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAACCGTCGATATTTACTGCATCTGCAGAACCCCTGCTCCTGGTGCT
GTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(146-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

72.199

100

0.722
  comF Vibrio cholerae strain A1552

48.319

98.755

0.477

Multiple sequence alignment