Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   AOT11_RS06175 Genome accession   NZ_CP012881
Coordinates   1339318..1340028 (+) Length   236 a.a.
NCBI ID   WP_026050271.1    Uniprot ID   -
Organism   Vibrio vulnificus NBRC 15645 = ATCC 27562     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1334318..1345028
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOT11_RS06155 (AOT11_13225) greB 1334596..1335078 (-) 483 WP_011078926.1 transcription elongation factor GreB -
  AOT11_RS06160 (AOT11_13230) - 1335314..1337638 (+) 2325 WP_017420490.1 Tex family protein -
  AOT11_RS06165 (AOT11_13235) - 1337854..1338324 (-) 471 WP_011078928.1 hypothetical protein -
  AOT11_RS06170 (AOT11_13240) bioH 1338462..1339229 (-) 768 WP_026050272.1 pimeloyl-ACP methyl ester esterase BioH -
  AOT11_RS06175 comF 1339318..1340028 (+) 711 WP_026050271.1 ComF family protein Machinery gene
  AOT11_RS06180 (AOT11_13250) nfuA 1340159..1340743 (+) 585 WP_026050270.1 Fe-S biogenesis protein NfuA -
  AOT11_RS06185 (AOT11_13255) nudE 1340859..1341413 (+) 555 WP_011078932.1 ADP compounds hydrolase NudE -
  AOT11_RS06190 (AOT11_13260) cysQ 1341428..1342255 (+) 828 WP_017420493.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  AOT11_RS06195 (AOT11_13265) - 1342372..1343133 (-) 762 WP_017420494.1 type II secretion system protein N -
  AOT11_RS06200 (AOT11_13270) - 1343135..1343626 (-) 492 WP_017420495.1 type II secretion system protein M -
  AOT11_RS06205 (AOT11_13275) gspL 1343634..1344833 (-) 1200 WP_017420496.1 type II secretion system protein GspL -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27290.04 Da        Isoelectric Point: 9.6760

>NTDB_id=158019 AOT11_RS06175 WP_026050271.1 1339318..1340028(+) (comF) [Vibrio vulnificus NBRC 15645 = ATCC 27562]
MLTDWLSEKILRSLPRLCHLCGLPMNHDHHPLWCRHCLTLFDAEPRCQRCGLPTLTVVPQCGQCLKSPPPWQRLYCLTPY
RFPASHYVNQIKHQRKFWYCASLAPLLIQRIDHPAPLLLSVPMHWRRQWQRGFNQSDVLAAQLARRLNRPFLAHAFTRLL
HTPPQQGLNKQQRQRNLAGAFRLNRSALPHAIPKHVAIVDDVVTTGCTVRQLCQLLLAVGVESIDIYCLCRTPEKD

Nucleotide


Download         Length: 711 bp        

>NTDB_id=158019 AOT11_RS06175 WP_026050271.1 1339318..1340028(+) (comF) [Vibrio vulnificus NBRC 15645 = ATCC 27562]
ATGTTAACCGATTGGCTTAGTGAAAAAATACTCCGATCTCTTCCTCGCCTCTGTCATCTGTGCGGCTTGCCGATGAATCA
CGACCACCACCCGCTCTGGTGCCGGCACTGCCTAACCCTGTTCGATGCCGAACCGCGTTGCCAACGTTGCGGGCTGCCGA
CGTTAACGGTTGTCCCCCAATGCGGCCAATGTCTGAAATCTCCACCCCCTTGGCAAAGGCTTTACTGCCTCACGCCGTAT
CGCTTCCCGGCCTCACACTACGTCAATCAAATCAAACATCAGCGCAAGTTCTGGTACTGCGCCAGCTTGGCTCCTTTGCT
CATCCAACGCATTGACCACCCCGCGCCACTGCTGCTCTCTGTGCCGATGCATTGGCGTCGGCAATGGCAGCGAGGCTTCA
ATCAAAGCGATGTATTGGCGGCGCAACTGGCCCGTAGATTAAATCGCCCATTCCTTGCTCACGCTTTTACTCGTTTGTTG
CACACTCCGCCACAGCAAGGGCTCAATAAACAGCAGCGTCAGCGCAATTTAGCAGGTGCTTTTCGCCTCAATCGCTCAGC
GCTGCCCCATGCGATTCCCAAGCATGTCGCGATTGTCGATGATGTGGTCACGACGGGCTGTACGGTACGACAATTATGTC
AATTACTGCTTGCAGTCGGCGTGGAAAGCATTGATATTTATTGCCTCTGCCGAACTCCCGAGAAGGATTGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(138-235)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

56.41

99.153

0.559
  comF Vibrio campbellii strain DS40M4

46.25

100

0.47

Multiple sequence alignment