Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   FORC17_RS14335 Genome accession   NZ_CP012739
Coordinates   3091946..3092656 (+) Length   236 a.a.
NCBI ID   WP_173652416.1    Uniprot ID   -
Organism   Vibrio vulnificus strain FORC_017     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3086946..3097656
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC17_RS14315 (FORC17_2800) greB 3087357..3087839 (-) 483 WP_013572566.1 transcription elongation factor GreB -
  FORC17_RS14320 (FORC17_2801) - 3088075..3090399 (+) 2325 WP_065090788.1 Tex family protein -
  FORC17_RS14325 (FORC17_2802) - 3090482..3090952 (-) 471 WP_011078928.1 hypothetical protein -
  FORC17_RS14330 (FORC17_2803) bioH 3091090..3091857 (-) 768 WP_065090789.1 pimeloyl-ACP methyl ester esterase BioH -
  FORC17_RS14335 (FORC17_2804) comF 3091946..3092656 (+) 711 WP_173652416.1 ComF family protein Machinery gene
  FORC17_RS14340 (FORC17_2805) nfuA 3092787..3093371 (+) 585 WP_026050270.1 Fe-S biogenesis protein NfuA -
  FORC17_RS14345 (FORC17_2806) nudE 3093487..3094041 (+) 555 WP_065090791.1 ADP compounds hydrolase NudE -
  FORC17_RS14350 (FORC17_2807) cysQ 3094056..3094883 (+) 828 WP_045623813.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  FORC17_RS14355 (FORC17_2808) - 3095010..3095771 (-) 762 WP_011078934.1 type II secretion system protein N -
  FORC17_RS14360 (FORC17_2809) - 3095773..3096264 (-) 492 WP_065090792.1 type II secretion system protein M -
  FORC17_RS14365 (FORC17_2810) gspL 3096272..3097471 (-) 1200 WP_045618570.1 type II secretion system protein GspL -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27247.98 Da        Isoelectric Point: 9.7910

>NTDB_id=157454 FORC17_RS14335 WP_173652416.1 3091946..3092656(+) (comF) [Vibrio vulnificus strain FORC_017]
MLTDWLSEKILRSLPRLCHLCGLPMNHDHHPLWCQHCLTLFDAEPRCQRCGLPTLTAVPQCGQCLKSPPPWQRLYCLTPY
RFPASHYVNQIKHQRKFWYCASLAPLLIQRIDRPAPLLLSVPMHWRRQWLRGFNQSDVLAAQLARRLNRPFLAHAFTRLL
HTPPQQGLNKQQRQRNLAGAFRLNRSALPYAIPKHVAIVDDVVTTGSTVRQLCQLLLAVGVESIDIYCLCRTPEKD

Nucleotide


Download         Length: 711 bp        

>NTDB_id=157454 FORC17_RS14335 WP_173652416.1 3091946..3092656(+) (comF) [Vibrio vulnificus strain FORC_017]
ATGTTAACCGATTGGCTTAGTGAAAAAATACTCCGATCTCTTCCTCGCCTCTGTCATCTGTGCGGCTTGCCGATGAATCA
CGACCATCACCCGCTTTGGTGCCAGCACTGCCTAACCCTGTTCGATGCCGAACCGCGTTGCCAACGTTGCGGACTGCCGA
CGTTAACGGCTGTCCCCCAGTGCGGCCAATGTCTGAAATCTCCGCCCCCTTGGCAAAGGCTCTATTGCCTCACGCCGTAT
CGCTTCCCGGCCTCACACTACGTCAATCAGATCAAACATCAGCGCAAGTTCTGGTACTGCGCCAGCTTGGCACCTTTGCT
CATCCAACGCATTGACCGCCCCGCGCCACTTCTGCTTTCTGTGCCGATGCATTGGCGTCGGCAATGGCTACGAGGCTTCA
ATCAAAGCGATGTGTTGGCGGCGCAACTGGCCCGTAGATTAAATCGCCCCTTCCTTGCTCACGCGTTTACTCGTTTATTG
CACACTCCGCCACAGCAAGGGCTCAATAAACAGCAGCGTCAGCGCAACTTAGCGGGTGCTTTTCGCCTCAATCGCTCGGC
TTTACCCTATGCGATTCCCAAACACGTCGCGATTGTCGATGATGTGGTCACGACGGGCAGTACAGTACGACAATTATGTC
AATTACTGCTTGCAGTCGGCGTGGAAAGCATTGATATTTATTGCCTCTGCCGAACTCCCGAGAAGGATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(138-235)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

56.41

99.153

0.559
  comF Vibrio campbellii strain DS40M4

47.083

100

0.479

Multiple sequence alignment