Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   AOT13_RS17365 Genome accession   NZ_CP012712
Coordinates   3515465..3517822 (-) Length   785 a.a.
NCBI ID   WP_042383458.1    Uniprot ID   -
Organism   Parageobacillus thermoglucosidasius strain DSM 2542     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3510465..3522822
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOT13_RS17345 (AOT13_17320) - 3511812..3511997 (-) 186 WP_061577858.1 hypothetical protein -
  AOT13_RS17350 (AOT13_17325) dtd 3512096..3512554 (-) 459 WP_003248937.1 D-aminoacyl-tRNA deacylase -
  AOT13_RS17355 (AOT13_17330) - 3512569..3514764 (-) 2196 WP_042383460.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  AOT13_RS17360 (AOT13_17335) - 3514953..3515465 (-) 513 WP_003248934.1 adenine phosphoribosyltransferase -
  AOT13_RS17365 (AOT13_17340) recJ 3515465..3517822 (-) 2358 WP_042383458.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  AOT13_RS17370 (AOT13_17345) secDF 3517951..3520203 (-) 2253 WP_003248932.1 protein translocase subunit SecDF -
  AOT13_RS17375 (AOT13_17350) - 3520385..3520681 (-) 297 WP_003248931.1 post-transcriptional regulator -
  AOT13_RS17380 (AOT13_17355) spoVB 3520799..3522361 (+) 1563 WP_003248930.1 stage V sporulation protein B -
  AOT13_RS17385 (AOT13_17360) - 3522431..3522805 (+) 375 WP_013876538.1 TIGR04086 family membrane protein -

Sequence

Protein


Download         Length: 785 a.a.        Molecular weight: 87987.32 Da        Isoelectric Point: 5.2137

>NTDB_id=156712 AOT13_RS17365 WP_042383458.1 3515465..3517822(-) (recJ) [Parageobacillus thermoglucosidasius strain DSM 2542]
MLIAKTRWDVKRPDENIVKHLVEQLRIDPLIATLLVHRGVRTAEEANAFLYPLKQPFYDPFLLDGMERAVARIQRAIQDG
EHILVYGDYDADGVSSTTVMVSALKEAGAIVDFYIPNRFTEGYGPNEKAFRWAKDQGFSLIITVDNGIAAVKEVALANEL
GMDVIITDHHEVGPTLPEAYEIIHPKKPGSTYPFRELAGVGVAFKVAHALLGEVPRYLLDVAAIGTIADLVSLTGENRVL
VAQGLEQLRKTKRIGLRALCTQCGIDAEKIDEQTVGFIIAPRMNAAGRLGEADPAVRLLMTEDEEEAKRLAKEMDDLNRE
RQQLVAEIAEEAAQIIQEQFPPSENKVLVVAKEGWNPGVIGIVASRLVEQFYRPTIVLSIDVEKGIAKGSARSIHGFDMF
SSLSTCRDILLHFGGHPMAAGMTLSLEDVGELRRRLNALADDMLTDDDFTPITSIDAVCSVSDLTMAVAEQLEKFAPFGV
GNAKPLFLMENVSVETMRRVGADQSHLKAVFAQNGAAIDSVGFGFGYLRDEIAPDAKVSVVGELVINEWNHLRKPQLMIY
DMAVHECQLFDIRGMRDVRSLIAALPPDKRMLIMFREDTADALGIGAYKEEIYYAASAEEASRLCLDGRYVVLLDMPPSL
EMIKMLLRSSLPARIYALFYQRETHFFRTLPTREHFKWFYAFLRKRGMFNLAKHGGELARARGWTEETVWFMAKVFLELE
FITQRDGIVSLVPQPAKRDLSESPTYRLKQAQYELESLFLYSTYEQLKRCLFEMKGLHTYEEANA

Nucleotide


Download         Length: 2358 bp        

>NTDB_id=156712 AOT13_RS17365 WP_042383458.1 3515465..3517822(-) (recJ) [Parageobacillus thermoglucosidasius strain DSM 2542]
ATGTTAATCGCAAAAACACGTTGGGATGTAAAACGGCCCGACGAAAATATCGTAAAGCATTTAGTGGAACAATTGCGGAT
CGATCCGCTTATTGCCACCCTTCTTGTCCATCGCGGAGTCCGCACGGCAGAAGAGGCGAACGCGTTTTTATATCCGCTGA
AACAACCGTTTTATGATCCGTTTTTGCTAGATGGGATGGAGCGGGCGGTCGCGCGGATTCAGCGGGCGATACAGGATGGG
GAGCATATTTTAGTATATGGCGATTATGATGCGGACGGCGTAAGCAGCACGACGGTAATGGTCAGTGCGCTGAAGGAAGC
TGGCGCCATTGTGGATTTTTACATTCCCAACCGCTTTACCGAAGGATATGGCCCGAATGAAAAAGCGTTTCGCTGGGCAA
AGGATCAGGGATTTTCCTTGATTATTACGGTCGATAATGGCATTGCCGCGGTGAAGGAAGTGGCGCTTGCCAACGAGCTC
GGGATGGATGTCATTATTACCGACCATCACGAAGTGGGGCCGACGCTGCCGGAAGCGTATGAAATCATTCATCCGAAAAA
GCCTGGAAGTACATATCCGTTTCGAGAATTAGCCGGGGTTGGAGTGGCGTTTAAAGTTGCGCATGCGCTGCTCGGAGAGG
TGCCGCGCTATTTATTGGATGTCGCCGCAATCGGAACGATCGCCGATCTCGTTTCCCTTACCGGCGAAAATCGCGTATTG
GTGGCGCAAGGGCTTGAGCAGTTGCGAAAGACAAAACGTATAGGATTGCGCGCATTGTGTACACAATGCGGGATAGACGC
AGAAAAAATTGACGAGCAAACGGTGGGATTTATCATTGCGCCGCGGATGAATGCGGCCGGGCGATTGGGGGAAGCCGATC
CCGCTGTAAGATTGCTGATGACGGAGGATGAAGAAGAAGCAAAAAGGCTTGCGAAAGAAATGGATGATTTAAACCGGGAA
CGGCAGCAGCTTGTCGCGGAAATCGCGGAAGAAGCGGCACAAATCATACAGGAACAATTTCCGCCATCTGAGAATAAAGT
GCTGGTGGTGGCCAAAGAAGGATGGAATCCCGGAGTCATTGGCATTGTTGCATCCCGGCTGGTCGAACAGTTTTATCGCC
CGACGATCGTGCTAAGCATTGATGTGGAAAAAGGAATTGCGAAAGGTTCGGCGCGAAGCATTCACGGGTTTGATATGTTT
TCAAGCTTGTCGACGTGCCGCGATATTTTGCTGCATTTTGGCGGCCATCCGATGGCAGCGGGAATGACGCTGTCTCTTGA
AGATGTTGGCGAATTGCGCCGGCGTCTTAACGCGCTTGCTGACGATATGCTGACAGACGATGATTTTACGCCAATAACAT
CGATTGACGCGGTTTGTTCCGTATCTGATTTAACCATGGCGGTGGCGGAGCAGCTGGAAAAATTCGCTCCATTTGGTGTC
GGTAATGCCAAACCTCTTTTTTTAATGGAAAATGTGTCAGTGGAAACGATGCGCCGCGTCGGTGCCGATCAATCGCATTT
AAAGGCCGTTTTTGCGCAAAATGGCGCTGCAATTGATAGCGTTGGCTTCGGCTTCGGATATTTGCGCGATGAAATCGCTC
CGGATGCGAAAGTGTCGGTTGTCGGCGAGCTTGTTATTAATGAGTGGAATCATCTTCGCAAGCCGCAGCTGATGATTTAT
GATATGGCGGTGCATGAATGCCAGCTGTTTGATATTCGCGGTATGCGCGATGTAAGGTCGCTGATTGCAGCGCTTCCGCC
AGATAAGCGGATGCTCATTATGTTTCGCGAAGATACGGCGGATGCGTTAGGAATCGGAGCATATAAAGAAGAGATTTATT
ATGCCGCCTCAGCGGAAGAAGCATCGCGGCTTTGTTTAGATGGCCGCTATGTGGTGCTGTTGGATATGCCTCCGTCTTTG
GAAATGATAAAAATGTTATTACGTTCTAGTTTACCTGCACGCATTTATGCGTTATTCTATCAAAGGGAGACTCATTTTTT
CCGCACGTTGCCGACGCGTGAACATTTTAAGTGGTTTTACGCGTTTTTGCGGAAGCGGGGCATGTTTAATTTGGCGAAAC
ACGGCGGAGAGTTGGCACGTGCGCGTGGCTGGACGGAAGAAACCGTCTGGTTTATGGCGAAAGTGTTTCTTGAACTGGAA
TTTATAACGCAACGGGATGGCATCGTATCGCTTGTTCCTCAGCCGGCTAAGCGAGATTTAAGCGAATCGCCGACTTATCG
CTTGAAACAAGCTCAGTATGAGCTGGAAAGTCTTTTTTTATATTCCACATATGAACAATTAAAGCGGTGTCTTTTTGAAA
TGAAAGGTTTGCACACATATGAGGAGGCAAATGCATAA

Domains

Predicted by InterproScan.

RecJ OB domain (RecJ_OB)

(455-561)

DHHA1 domain (DHHA1)

(305-439)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-771)

DHH family (DHH)

(82-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

54.522

98.599

0.538

Multiple sequence alignment