Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   CjjRM3196_RS06770 Genome accession   NZ_CP012690
Coordinates   1302575..1303090 (-) Length   171 a.a.
NCBI ID   WP_002853848.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni strain RM3196     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1297575..1308090
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CjjRM3196_RS06755 (CjjRM3196_1340) - 1297682..1299415 (-) 1734 WP_002853967.1 flagellin A -
  CjjRM3196_RS06760 (CjjRM3196_1341) - 1299498..1301324 (-) 1827 WP_002853842.1 motility associated factor glycosyltransferase family protein -
  CjjRM3196_RS06765 (CjjRM3196_1342) - 1301334..1302575 (-) 1242 WP_002853665.1 DUF2920 family protein -
  CjjRM3196_RS06770 (CjjRM3196_1343) ctsG 1302575..1303090 (-) 516 WP_002853848.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  CjjRM3196_RS06775 (CjjRM3196_1344) tsaD 1303091..1304098 (-) 1008 WP_002853625.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  CjjRM3196_RS06780 (CjjRM3196_1345) - 1304095..1305489 (-) 1395 WP_002853606.1 M99 family carboxypeptidase catalytic domain-containing protein -
  CjjRM3196_RS06785 (CjjRM3196_1346) dxr 1305491..1306561 (-) 1071 WP_002853864.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  CjjRM3196_RS06790 (CjjRM3196_1347) cdsA 1306558..1307283 (-) 726 WP_002853616.1 phosphatidate cytidylyltransferase -
  CjjRM3196_RS06795 (CjjRM3196_1348) - 1307292..1307630 (-) 339 WP_002852397.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18707.52 Da        Isoelectric Point: 5.7789

>NTDB_id=156451 CjjRM3196_RS06770 WP_002853848.1 1302575..1303090(-) (ctsG) [Campylobacter jejuni subsp. jejuni strain RM3196]
MRKAFTILELVFVIIILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLGN
FNGTKEVNFRVGDDKECLKLVFIDRADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=156451 CjjRM3196_RS06770 WP_002853848.1 1302575..1303090(-) (ctsG) [Campylobacter jejuni subsp. jejuni strain RM3196]
ATGAGAAAAGCTTTTACTATATTAGAACTTGTTTTTGTGATCATTATTTTGGGAATTTTAGCCGCTATTGCTTTGCCAAA
AATGAGTTCAAGTAAGGATGAAGCTGAAGTTAGCAAGTCTTTAAACAACCTTAAAACTTTGATCAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGTGGGGTTGAAAATGTCGATCTTGGCAAT
TTCAATGGCACAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAGAATGCTTAAAACTTGTTTTTATAGATAGAGCGGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGCAAAAATGCTATCATTAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGTGTGATTTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

92.982

100

0.93

Multiple sequence alignment