Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   RN86_RS05065 Genome accession   NZ_CP012648
Coordinates   1032531..1034288 (+) Length   585 a.a.
NCBI ID   WP_046164609.1    Uniprot ID   -
Organism   Streptococcus gordonii strain KCOM 1506 (= ChDC B679)     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1027531..1039288
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RN86_RS05040 (RN86_05035) scrK 1028117..1029016 (+) 900 WP_046164612.1 fructokinase ScrK -
  RN86_RS05045 (RN86_05040) - 1029065..1029475 (+) 411 WP_046164611.1 peptide deformylase -
  RN86_RS05050 (RN86_05045) - 1029484..1030053 (+) 570 WP_046164610.1 hypothetical protein -
  RN86_RS05055 (RN86_05050) - 1030324..1030782 (+) 459 WP_012130789.1 MarR family transcriptional regulator -
  RN86_RS05060 (RN86_05055) rcrP 1030775..1032541 (+) 1767 WP_046164750.1 ABC transporter ATP-binding protein Regulator
  RN86_RS05065 (RN86_05060) rcrQ 1032531..1034288 (+) 1758 WP_046164609.1 ABC transporter ATP-binding protein Regulator
  RN86_RS05070 (RN86_05065) manA 1034449..1035393 (+) 945 WP_012130786.1 mannose-6-phosphate isomerase, class I -
  RN86_RS05075 (RN86_05070) - 1035835..1037448 (+) 1614 WP_053794400.1 CTP synthase -
  RN86_RS05080 (RN86_05075) - 1037518..1037928 (+) 411 WP_008809691.1 effector binding domain-containing protein -
  RN86_RS05090 (RN86_05085) - 1038336..1039217 (+) 882 WP_008809690.1 class II fructose-bisphosphate aldolase -

Sequence

Protein


Download         Length: 585 a.a.        Molecular weight: 64902.73 Da        Isoelectric Point: 5.0237

>NTDB_id=156083 RN86_RS05065 WP_046164609.1 1032531..1034288(+) (rcrQ) [Streptococcus gordonii strain KCOM 1506 (= ChDC B679)]
MENKKTSLFTQMKPYIKGFQLPFVIAVAGAIISSIITVFGPYKLREITNLITEGLVGEMDLGAISNIGFFLAFLYVVGSL
INYAQGYAISDMIQHFSKRLRTAIAEKINRLPLSYFDSHSQGDTLSRVTNDVDTVGQSLTQSLGTLISSVLLLIAVLFMM
FYTNVVLSFVTIGSVLLGFVFSAVLMAKSQRYFQEQQSNLAAINGYVEEMYSGHNVITSYNGAEKTRLAFNALNQNLYTS
MWKSQFISGIMFPLMNFVGNFGYVMVVIVGATMAINGSISMGTIVAFMVYVRIFSQPLSQIAQGITTLQSASAAMGRVFE
FLAEEDMEDDSHKLQQLTSVKGRVQFKDVFFGYNPDKTIIHDFSAEAKAGQKIAIVGPTGAGKTTIVNLLMKFYDIDRGR
ITIDGVDTKEMKRSEVHDAFSMVLQDTWLFEGTIKENLIYNQKDITDQAVVEAAKAVGVHHFIMTLPDGYDTVLDDTVSL
SVGQKQLLTIARALLKDAPLLILDEATSSVDTRTEELIQKAMDKLMEGRTSFVIAHRLSTIRNADLILVMRDGNIIEQGN
HDQLMEQGGFYADLYNSQFVEEDQE

Nucleotide


Download         Length: 1758 bp        

>NTDB_id=156083 RN86_RS05065 WP_046164609.1 1032531..1034288(+) (rcrQ) [Streptococcus gordonii strain KCOM 1506 (= ChDC B679)]
ATGGAAAATAAAAAAACATCTTTATTTACCCAGATGAAGCCCTATATTAAAGGCTTCCAACTTCCTTTTGTCATTGCAGT
AGCCGGTGCTATCATCTCTAGTATTATTACAGTCTTTGGTCCCTATAAGTTGCGTGAAATCACAAACTTAATTACAGAAG
GTCTAGTAGGTGAGATGGACTTGGGAGCTATCTCAAATATAGGTTTCTTCCTAGCTTTCCTTTATGTTGTAGGTTCTCTT
ATCAATTATGCGCAGGGTTATGCTATTTCGGATATGATTCAGCACTTTTCAAAACGTTTGAGAACTGCGATTGCAGAGAA
AATCAACCGCCTACCATTAAGTTACTTTGATAGTCATTCTCAAGGCGATACCCTATCACGTGTGACAAATGATGTAGATA
CAGTCGGACAATCGTTGACACAGAGCTTGGGGACTCTGATTTCTTCGGTCTTACTTTTAATTGCTGTACTCTTTATGATG
TTTTATACTAATGTTGTACTTTCATTTGTGACGATTGGTTCGGTCTTATTGGGTTTCGTTTTCTCAGCAGTTCTGATGGC
GAAATCTCAGAGATATTTCCAAGAACAGCAAAGTAACCTAGCAGCTATCAATGGTTATGTGGAAGAAATGTACTCCGGGC
ACAATGTTATCACTAGCTACAATGGTGCAGAAAAGACGCGCTTGGCCTTCAATGCCCTCAATCAAAATCTGTATACTAGT
ATGTGGAAGTCACAATTTATTTCAGGAATTATGTTTCCTCTGATGAACTTTGTTGGTAATTTTGGATATGTGATGGTCGT
GATTGTAGGTGCCACAATGGCTATTAATGGCTCCATTAGCATGGGTACGATTGTAGCTTTCATGGTCTACGTACGAATTT
TTTCACAACCTCTTTCCCAAATTGCTCAGGGAATCACAACACTCCAATCTGCTAGTGCAGCTATGGGACGTGTCTTTGAG
TTTCTAGCAGAAGAAGATATGGAAGATGATTCTCACAAACTTCAACAATTAACAAGTGTAAAAGGACGTGTCCAGTTTAA
AGATGTCTTCTTTGGTTACAATCCTGATAAGACTATTATTCACGATTTCTCAGCAGAAGCAAAGGCTGGACAAAAAATTG
CAATTGTTGGCCCTACTGGTGCGGGTAAAACAACCATCGTCAATCTTCTTATGAAGTTCTATGATATTGACCGTGGTCGC
ATCACCATTGATGGCGTTGATACCAAAGAAATGAAACGCTCTGAAGTTCACGATGCTTTCTCTATGGTGTTACAGGACAC
ATGGCTTTTTGAAGGGACTATTAAAGAAAACTTGATCTATAATCAGAAAGATATCACGGACCAAGCAGTTGTTGAAGCTG
CAAAAGCGGTTGGTGTCCACCACTTTATCATGACCTTACCAGACGGTTATGATACGGTTTTGGATGACACAGTCAGTCTT
TCTGTTGGTCAAAAGCAGCTCTTGACTATTGCAAGGGCTCTGCTCAAAGATGCGCCACTCCTTATCTTAGATGAGGCAAC
TTCCTCAGTCGATACACGGACAGAGGAATTGATTCAAAAAGCGATGGACAAGCTGATGGAAGGCAGGACTTCCTTTGTCA
TTGCTCACCGACTATCCACCATTCGCAATGCTGATTTGATCCTAGTCATGCGTGATGGGAATATTATCGAACAAGGAAAC
CATGACCAGCTCATGGAGCAGGGAGGTTTCTACGCTGATCTTTACAACAGTCAGTTCGTTGAAGAAGATCAAGAATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(24-298)

ABC transporter (ABC_tran)

(361-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

70.962

99.487

0.706

Multiple sequence alignment