Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   LLUC08_RS09250 Genome accession   NZ_CP015903
Coordinates   1908936..1909715 (-) Length   259 a.a.
NCBI ID   WP_050428201.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain UC08     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1903936..1914715
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLUC08_RS09230 (LLUC08_1796) pflA 1904661..1905455 (-) 795 WP_003130318.1 pyruvate formate-lyase-activating protein -
  LLUC08_RS09235 (LLUC08_1797) - 1905673..1907010 (-) 1338 WP_021722264.1 hemolysin family protein -
  LLUC08_RS09240 (LLUC08_1798) - 1907132..1908247 (-) 1116 WP_023189057.1 AI-2E family transporter -
  LLUC08_RS09245 (LLUC08_1799) - 1908396..1908845 (+) 450 WP_025017176.1 GNAT family N-acetyltransferase -
  LLUC08_RS09250 (LLUC08_1800) endA 1908936..1909715 (-) 780 WP_050428201.1 DNA/RNA non-specific endonuclease Machinery gene
  LLUC08_RS09255 (LLUC08_1801) - 1909908..1910804 (-) 897 WP_039115881.1 peptidoglycan amidohydrolase family protein -
  LLUC08_RS09260 (LLUC08_1802) - 1910916..1911170 (-) 255 WP_023189062.1 phage holin -
  LLUC08_RS09265 (LLUC08_1803) - 1911160..1911450 (-) 291 WP_124175219.1 hypothetical protein -
  LLUC08_RS09270 (LLUC08_1804) - 1911667..1911960 (+) 294 WP_025017162.1 hypothetical protein -
  LLUC08_RS09275 (LLUC08_1805) - 1911990..1914230 (-) 2241 WP_081200046.1 glycoside hydrolase domain-containing protein -
  LLUC08_RS09280 (LLUC08_1806) - 1914330..1914677 (-) 348 WP_023189066.1 DUF722 domain-containing protein -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29129.05 Da        Isoelectric Point: 9.0583

>NTDB_id=155899 LLUC08_RS09250 WP_050428201.1 1908936..1909715(-) (endA) [Lactococcus lactis subsp. lactis strain UC08]
MKNKKIIPLLIVSIFILGGCANSQSDMDKSNHKWSQKDKTPSEELAKSVLTSSIKEQLKTDNIKFDHGSFIVNNNNNDLA
IINVVDPYAKNEIDIQGRPYLGEAVLPKSIQNNEKDNKDEKVIPQFGWGQKSNLKGFYKKAYTKGFLLNSKLIGGVKDFN
DSGSNMENIFTQTVWASEANDSSSKGQKYFENMIHKVQDKNMIIKYRVKALYDGSNLVPSGTEIEAKSDDFSLEIHVFIP
NVQPNLKVDYKTGQVTEVK

Nucleotide


Download         Length: 780 bp        

>NTDB_id=155899 LLUC08_RS09250 WP_050428201.1 1908936..1909715(-) (endA) [Lactococcus lactis subsp. lactis strain UC08]
ATGAAGAACAAAAAAATTATCCCATTACTGATTGTCAGCATTTTTATCTTAGGGGGCTGTGCTAACAGTCAATCTGATAT
GGATAAAAGTAATCATAAATGGAGTCAAAAAGATAAGACACCCTCAGAAGAACTCGCAAAAAGTGTTCTGACTTCTTCAA
TAAAAGAACAATTAAAAACAGATAACATAAAATTTGATCACGGTTCATTTATCGTTAATAATAATAACAATGATTTAGCA
ATTATTAATGTTGTAGACCCATACGCTAAGAATGAAATAGATATTCAAGGGCGTCCTTATTTGGGTGAAGCAGTTCTCCC
AAAATCTATTCAAAATAATGAAAAGGATAATAAAGATGAAAAAGTGATTCCTCAATTTGGTTGGGGACAAAAATCTAACT
TGAAAGGCTTCTATAAAAAAGCTTATACTAAAGGTTTTTTGCTAAATAGCAAATTAATAGGTGGCGTTAAAGATTTCAAT
GATAGCGGGTCAAATATGGAAAATATATTTACTCAAACGGTTTGGGCGAGTGAAGCTAATGATTCAAGTTCCAAGGGACA
AAAATATTTTGAAAATATGATTCATAAAGTTCAAGATAAGAATATGATCATCAAGTATAGAGTGAAAGCACTCTATGATG
GAAGTAACCTTGTCCCATCAGGAACTGAAATAGAAGCAAAATCTGATGATTTTTCACTCGAGATACATGTTTTTATTCCA
AATGTTCAACCAAATCTTAAAGTAGATTATAAAACAGGTCAGGTCACTGAAGTCAAATAA

Domains

Predicted by InterProScan.

DNA/RNA non-specific endonuclease (Endonuclea_NS_2)

(92-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

42.174

88.803

0.375
  endA Streptococcus pneumoniae D39

42.174

88.803

0.375
  endA Streptococcus pneumoniae R6

42.174

88.803

0.375
  endA Streptococcus pneumoniae TIGR4

42.174

88.803

0.375