Detailed information NTG0155891

Bioinformatically predicted

Overview

• Name: recD/recD2/recDB
• Type: Machinery gene
• Locus tag: LLUC08_RS08850
• Genome accession: NZ_CP015903
• Coordinates: 1821357..1823861 (-)
• Length: 834 a.a.
• NCBI ID: WP_060416512.1
• Uniprot ID: -
• Organism: Lactococcus lactis subsp. lactis strain UC08
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1816357..1828861

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LLUC08_RS08825 (LLUC08_1715)	-	1817532..1818215 (+)	684	WP_003130398.1	lactate utilization protein C	-
LLUC08_RS08830 (LLUC08_1716)	-	1818289..1819002 (-)	714	WP_023188576.1	Bax inhibitor-1/YccA family protein	-
LLUC08_RS08835 (LLUC08_1717)	-	1819115..1820029 (-)	915	WP_012898318.1	diacylglycerol kinase family protein	-
LLUC08_RS08840 (LLUC08_1718)	-	1820185..1820697 (-)	513	WP_003132795.1	HD domain-containing protein	-
LLUC08_RS08845 (LLUC08_1719)	rpsT	1821030..1821263 (+)	234	WP_010906113.1	30S ribosomal protein S20	-
LLUC08_RS08850 (LLUC08_1720)	recD/recD2/recDB	1821357..1823861 (-)	2505	WP_060416512.1	ATP-dependent RecD-like DNA helicase	Machinery gene
LLUC08_RS08855 (LLUC08_1721)	-	1823858..1824451 (-)	594	WP_010906114.1	histidine phosphatase family protein	-
LLUC08_RS08860 (LLUC08_1722)	pheA	1824454..1825293 (-)	840	WP_023188548.1	prephenate dehydratase	-
LLUC08_RS08865 (LLUC08_1723)	-	1825295..1825783 (-)	489	WP_017864896.1	shikimate kinase	-
LLUC08_RS08870 (LLUC08_1724)	aroA	1825807..1827099 (-)	1293	WP_023188546.1	3-phosphoshikimate 1-carboxyvinyltransferase	-
LLUC08_RS08875 (LLUC08_1725)	-	1827220..1828284 (-)	1065	WP_010906116.1	prephenate dehydrogenase	-

Sequence

Protein

• Length: 834 a.a.
• Molecular weight: 92961.42 Da
• Isoelectric Point: 4.4906

>NTDB_id=155891 LLUC08_RS08850 WP_060416512.1 1821357..1823861(-) (recD/recD2/recDB) [Lactococcus lactis subsp. lactis strain UC08]
MIEKTYFTGSIEAIFFSNPSNFYKVLLIEIDETNAEYDDFEIVVNGTIGDVVEGDSYTFYGQLTQHPKYGEQLQVSQYEK
AVPTSGAGLVKYFSSDKFPGIGKKTAEKIVETFPENTVDSILEAPEKLDGLLTLARKNSFIKRLRENHGMEKVLTKLAEY
GLPSKITFQIYELYKEETIEKIEENPYQLVEDVKGVGFKTADKIASSLGIEADSPNRFRAALMHEVNTHSQSTGDTYIEA
KNLLEMTIDLLEEARNVEVNPSAVAEEINGLIVDGKVQQEGTKIFENSLYFAEDGIRKSLTALTNRSGKDFADEKLLTVL
AEVERDLEITYDDLQKQAIISAMNQQFFILTGGPGTGKTTIINGFIETYARIHQLDLDPDHYNDDVFPILLAAPTGRASR
RMNELTGLPAATIHRHLGLGQDEAEDALGNELSGALLIVDEFSMVDTWLANKLFQAIPGSMKVLLVGDADQLPSVGPGQI
FADLLKIPEIPSVKLDKIFRQGDDSTITDLAHHIKDGQLPSDFTAKKPDRSYFEVSANFVPQMVEQIASAWQKRGNNPFE
LQILAPMYKGMAGINAMNVLLQNLFNPLNDRLEFALGDMKFREGDKVLHLVNDAEANVFNGDLGQIVELIAAKYTDSKQD
ELVMDFDGQELTYPRAEWYKITLAYAMSIHKSQGSEFSTVIVPMVSSYSRMLERNLLYTAITRAKQSLILLGEERAFAQA
VAREGANRKTYLIERFMGENPAAKNLSVEIVSEKVTDKKEISDKEKKPAAPVELQGQIRSVSKKMPAQVEEISLFEDEEI
ETLDKGSLTEALILSGNFDPLIGLTQQDFAIFNK

Nucleotide

• Length: 2505 bp

>NTDB_id=155891 LLUC08_RS08850 WP_060416512.1 1821357..1823861(-) (recD/recD2/recDB) [Lactococcus lactis subsp. lactis strain UC08]
ATGATTGAAAAAACTTATTTTACTGGTTCGATTGAGGCAATATTTTTCTCCAATCCCAGTAATTTTTATAAAGTTCTACT
CATTGAAATTGATGAAACTAATGCTGAATATGATGATTTTGAAATTGTGGTTAACGGGACAATTGGGGATGTGGTTGAAG
GAGATTCTTATACATTTTATGGTCAATTGACGCAGCATCCTAAATATGGGGAACAATTACAGGTCAGTCAATATGAAAAA
GCAGTGCCGACTTCTGGTGCTGGTTTAGTTAAATATTTTTCTTCAGATAAATTTCCTGGAATTGGTAAGAAAACGGCAGA
AAAAATTGTTGAAACTTTTCCTGAAAATACGGTAGATTCAATTTTAGAAGCGCCGGAAAAATTGGATGGTCTATTGACTC
TAGCCAGAAAAAATTCATTTATCAAACGATTACGTGAGAATCATGGAATGGAAAAAGTGCTGACCAAGCTTGCAGAATAT
GGCTTACCAAGCAAAATCACTTTTCAAATTTATGAACTTTATAAAGAAGAAACGATTGAAAAAATTGAGGAAAATCCTTA
TCAGCTTGTGGAAGATGTTAAGGGAGTTGGTTTTAAAACAGCTGATAAGATTGCAAGTAGTTTAGGAATTGAAGCGGATA
GCCCTAATCGATTTCGAGCGGCATTGATGCATGAGGTCAATACACATTCGCAATCAACAGGTGATACTTACATTGAAGCC
AAAAATTTACTTGAGATGACGATAGACTTACTTGAAGAAGCTCGTAATGTCGAGGTCAATCCGTCTGCTGTTGCGGAGGA
AATTAATGGTTTAATTGTTGATGGAAAAGTGCAACAAGAAGGAACAAAAATATTTGAGAATTCCTTGTACTTCGCTGAGG
ACGGGATTCGGAAATCACTGACAGCATTAACTAATCGTTCGGGTAAAGATTTTGCTGATGAAAAGTTACTGACAGTATTG
GCTGAAGTTGAAAGAGATTTAGAAATTACTTATGATGATTTGCAAAAGCAAGCCATTATTAGTGCAATGAATCAGCAATT
TTTCATTTTGACTGGTGGACCAGGAACTGGTAAAACAACAATTATCAATGGTTTTATTGAAACTTATGCCCGTATTCATC
AGCTAGATTTGGACCCAGACCATTATAATGATGACGTCTTTCCTATATTACTGGCAGCACCGACTGGTCGAGCTTCAAGA
CGGATGAATGAGTTGACTGGTCTTCCAGCAGCGACGATTCACCGCCATTTGGGTTTGGGACAAGATGAAGCAGAAGATGC
TCTTGGAAATGAATTGTCTGGTGCTCTTTTGATTGTTGACGAATTTTCTATGGTTGATACTTGGTTAGCTAATAAACTTT
TTCAAGCGATTCCTGGTTCAATGAAAGTTCTCCTTGTTGGAGATGCTGACCAGCTTCCTTCTGTGGGGCCAGGACAAATT
TTTGCGGATTTACTAAAAATTCCAGAAATTCCGTCAGTAAAATTGGATAAGATTTTTCGTCAAGGGGATGATTCTACCAT
TACTGATTTAGCTCACCACATCAAAGATGGGCAATTGCCAAGTGATTTCACGGCGAAAAAACCTGACCGTTCTTATTTTG
AGGTCAGTGCTAATTTTGTTCCTCAGATGGTTGAACAAATCGCAAGTGCATGGCAAAAAAGAGGGAATAATCCTTTTGAA
TTACAAATCTTAGCGCCTATGTATAAAGGAATGGCCGGAATTAATGCAATGAATGTTCTTTTGCAAAATCTCTTTAATCC
GCTTAACGACCGACTTGAATTCGCTTTGGGTGATATGAAATTTCGTGAAGGAGATAAAGTTCTTCATTTAGTAAATGATG
CTGAGGCCAATGTATTTAACGGAGATTTGGGACAAATCGTAGAATTGATTGCAGCAAAATATACTGACAGTAAACAAGAT
GAGTTGGTGATGGATTTTGATGGTCAAGAATTGACTTATCCAAGAGCGGAGTGGTATAAAATTACTCTGGCTTATGCTAT
GTCCATTCATAAATCTCAAGGTTCGGAGTTTTCCACAGTTATTGTGCCGATGGTTTCTTCGTATTCACGGATGTTAGAGC
GAAATTTGCTTTATACGGCAATTACAAGGGCTAAACAAAGTCTGATTTTACTTGGTGAAGAACGAGCTTTTGCACAAGCG
GTGGCGCGTGAAGGGGCGAATCGAAAGACCTATCTGATTGAGCGATTTATGGGAGAAAATCCAGCGGCTAAAAATCTGTC
AGTAGAAATTGTGAGTGAAAAAGTTACTGACAAAAAAGAAATATCTGACAAAGAGAAGAAGCCTGCAGCGCCAGTAGAAT
TACAAGGGCAAATTCGTTCTGTCAGTAAAAAAATGCCAGCACAAGTAGAAGAAATTTCTTTATTTGAAGATGAAGAAATT
GAAACACTGGATAAGGGAAGCTTGACAGAAGCACTTATTTTGTCAGGAAATTTTGACCCTTTAATTGGTTTAACTCAACA
AGACTTTGCAATCTTTAATAAATAA

Domains

Predicted by InterProScan.

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (577-646)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (664-710)

• Helix-hairpin-helix containing domain (HHH_RecD2) (146-237)

• AAA domain (AAA_30) (331-522)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD/recD2/recDB	Bacillus subtilis subsp. subtilis str. 168	42.042	90.408	0.38