Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   LLUC06_RS10215 Genome accession   NZ_CP015902
Coordinates   2051099..2051878 (-) Length   259 a.a.
NCBI ID   WP_058221306.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain UC06     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2046099..2056878
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLUC06_RS10195 (LLUC06_1986) pflA 2046824..2047618 (-) 795 WP_003130318.1 pyruvate formate-lyase-activating protein -
  LLUC06_RS10200 (LLUC06_1987) - 2047836..2049173 (-) 1338 WP_021722264.1 hemolysin family protein -
  LLUC06_RS10205 (LLUC06_1988) - 2049295..2050410 (-) 1116 WP_023189057.1 AI-2E family transporter -
  LLUC06_RS10210 (LLUC06_1989) - 2050559..2051008 (+) 450 WP_025017176.1 GNAT family N-acetyltransferase -
  LLUC06_RS10215 (LLUC06_1990) endA 2051099..2051878 (-) 780 WP_058221306.1 DNA/RNA non-specific endonuclease Machinery gene
  LLUC06_RS10220 (LLUC06_1991) - 2052072..2052968 (-) 897 WP_081213675.1 peptidoglycan amidohydrolase family protein -
  LLUC06_RS10225 (LLUC06_1992) - 2053080..2053334 (-) 255 WP_023189062.1 phage holin -
  LLUC06_RS10230 (LLUC06_1993) - 2053324..2053614 (-) 291 WP_124175219.1 hypothetical protein -
  LLUC06_RS10235 (LLUC06_1994) - 2053831..2054124 (+) 294 WP_025017162.1 hypothetical protein -
  LLUC06_RS10240 (LLUC06_1995) - 2054154..2056394 (-) 2241 WP_058221304.1 glycoside hydrolase domain-containing protein -
  LLUC06_RS10245 (LLUC06_1996) - 2056494..2056841 (-) 348 WP_023189066.1 DUF722 domain-containing protein -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29099.02 Da        Isoelectric Point: 9.0583

>NTDB_id=155801 LLUC06_RS10215 WP_058221306.1 2051099..2051878(-) (endA) [Lactococcus lactis subsp. lactis strain UC06]
MKNKKIIPLLIVSIFILGGCANSQSDMDKSNHKWSQKDKTPSEELAKSVLTSSIKEQLKTDNIKFDHGSFIVNNNNNDLA
IINVVDPYAKNEIDIQGRPYLGEAVLPKSIQNNEKDNKDEKVIPQFGWGQKSNLKGFYKKAYTKGFLLNSKLIGGVKDFN
DSGSNMENIFTQTVWASEANDSSSKGQKYFENMIHKVQDKNMIIKYRVKALYDGGNLVPSGTEIEAKSDDFSLEIHVFIP
NVQPNLKVDYKTGQVTEVK

Nucleotide


Download         Length: 780 bp        

>NTDB_id=155801 LLUC06_RS10215 WP_058221306.1 2051099..2051878(-) (endA) [Lactococcus lactis subsp. lactis strain UC06]
ATGAAGAACAAAAAAATTATCCCATTACTGATTGTCAGCATTTTTATCTTAGGGGGCTGTGCTAACAGTCAATCTGATAT
GGATAAAAGTAATCATAAATGGAGTCAAAAAGATAAGACACCCTCAGAAGAACTCGCAAAAAGTGTTCTGACTTCTTCAA
TAAAAGAACAATTAAAAACAGATAACATAAAATTTGATCACGGTTCATTTATCGTTAATAATAATAACAATGATTTAGCA
ATTATTAATGTTGTAGACCCATACGCTAAGAATGAAATAGATATTCAAGGGCGTCCTTATTTGGGTGAAGCAGTTCTCCC
AAAATCTATTCAAAATAATGAAAAGGATAATAAAGATGAAAAAGTGATTCCTCAATTTGGTTGGGGACAAAAATCTAACT
TGAAAGGCTTCTATAAAAAAGCTTATACTAAAGGTTTTTTGCTAAATAGCAAACTAATAGGTGGCGTTAAAGATTTCAAT
GATAGCGGGTCAAATATGGAAAATATATTTACTCAAACGGTTTGGGCGAGTGAAGCTAATGATTCAAGTTCCAAGGGACA
AAAATATTTTGAAAATATGATTCATAAAGTTCAAGATAAGAATATGATCATCAAGTATAGAGTGAAAGCACTCTATGATG
GAGGTAACCTTGTCCCATCAGGAACTGAAATAGAAGCAAAATCTGATGATTTTTCACTCGAGATACATGTTTTTATTCCA
AATGTTCAACCAAATCTTAAAGTAGATTATAAAACAGGTCAGGTCACTGAAGTCAAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

41.048

88.417

0.363
  endA Streptococcus pneumoniae D39

41.048

88.417

0.363
  endA Streptococcus pneumoniae R6

41.048

88.417

0.363
  endA Streptococcus pneumoniae TIGR4

41.048

88.417

0.363