Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   LL275_RS01580 Genome accession   NZ_CP015897
Coordinates   293163..295040 (+) Length   625 a.a.
NCBI ID   WP_003131179.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain 275     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 288163..300040
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL275_RS01560 (LL275_0294) - 288352..289629 (-) 1278 WP_003131173.1 NAD(P)/FAD-dependent oxidoreductase -
  LL275_RS01565 (LL275_0295) - 289770..290597 (+) 828 WP_003131174.1 NAD(P)H-hydrate dehydratase -
  LL275_RS01570 (LL275_0296) - 290747..291160 (+) 414 WP_003131176.1 DUF1398 domain-containing protein -
  LL275_RS01575 (LL275_0297) rcrP 291331..293166 (+) 1836 WP_003131178.1 ABC transporter ATP-binding protein Regulator
  LL275_RS01580 (LL275_0298) rcrQ 293163..295040 (+) 1878 WP_003131179.1 ABC transporter ATP-binding protein Regulator
  LL275_RS01585 (LL275_0299) - 295137..295790 (+) 654 WP_003131181.1 YcjF family protein -
  LL275_RS01590 (LL275_0300) - 295836..296855 (-) 1020 WP_003131182.1 Gfo/Idh/MocA family oxidoreductase -
  LL275_RS14470 (LL275_0301) - 296839..297006 (-) 168 WP_003131184.1 hypothetical protein -
  LL275_RS01595 (LL275_0302) - 297194..297670 (-) 477 WP_003131187.1 S-ribosylhomocysteine lyase -
  LL275_RS01600 (LL275_0303) - 297884..298348 (+) 465 WP_003131188.1 GyrI-like domain-containing protein -
  LL275_RS01605 (LL275_0304) - 298413..299258 (+) 846 WP_003131189.1 aldo/keto reductase -
  LL275_RS01610 (LL275_0305) - 299438..299950 (+) 513 WP_043991118.1 isochorismatase family cysteine hydrolase -

Sequence

Protein


Download         Length: 625 a.a.        Molecular weight: 70252.15 Da        Isoelectric Point: 9.0369

>NTDB_id=155656 LL275_RS01580 WP_003131179.1 293163..295040(+) (rcrQ) [Lactococcus lactis subsp. lactis strain 275]
MMRGNYLNRGGKGADRFQKGRRAQNFFPTIIRLFKYMRRDLWGLLFSILIASLSVILSVQAPKILGNATTVIFDGVTKSL
KNHTAIQIDMAKVESILLYVMVIYLISFISGILQQSIMTRISQRTVYTLRREFKNKMKKLPVSYYDSHSNGDIMSRMIND
MDNISGTLNQTLIQLITSLLQFVGTIYFMLTISWQLALVVFITVPLAMITVRIVAPLSQKFFAEQQKNLGLLNDQIEENY
AGHAVIKTFNHEASAEKEFAKRNDNFYKSAWKAQFVSTLIYPTMRFINNLDYLAMAVIGGLKVISGTVNLGDVQAMLQYT
NQFAQPITNISNMLNTIQATVASAERIFEVLDEKEMTDGIPVSEKVADESSKKAVSNLGATDKTDFINFDQVAFSYNENQ
SLMTDVNFSVEVGQMIAIVGPTGAGKTTMINLLERFYDVTSGKILLEGKDIREINREQLRGRMAMVLQETWLFSGTIMDN
LQYGRLEATQEEVIQAAKMAHADEFITALPQGYQTLLNEAASNISQGQRQLLTIARAFLANPEILILDEATSSVDTRTER
LIQSAMNRLLKGRTSFVVAHRLSTIRDANQILVMENGNIVEMGNHESLLKENGLYASLYNSQFAK

Nucleotide


Download         Length: 1878 bp        

>NTDB_id=155656 LL275_RS01580 WP_003131179.1 293163..295040(+) (rcrQ) [Lactococcus lactis subsp. lactis strain 275]
ATGATGAGAGGAAATTATCTCAATCGAGGTGGCAAAGGGGCTGACCGTTTTCAAAAAGGTCGGCGAGCTCAAAATTTCTT
TCCAACGATTATTCGACTTTTCAAATATATGCGCAGAGATTTATGGGGACTTCTTTTTTCAATTTTAATTGCTTCGCTGT
CAGTCATTTTGTCGGTTCAGGCACCCAAAATTTTGGGAAATGCAACCACAGTGATATTTGATGGCGTAACAAAAAGTCTA
AAAAATCATACCGCAATTCAAATTGACATGGCTAAGGTCGAATCTATTTTGCTTTATGTCATGGTCATTTATCTGATTTC
ATTTATCTCTGGGATTTTGCAACAAAGCATTATGACACGCATTTCGCAACGAACAGTTTATACTTTACGTCGTGAATTTA
AAAACAAAATGAAAAAATTGCCAGTTTCATATTATGATAGCCATAGTAATGGGGATATCATGAGTCGAATGATAAATGAT
ATGGATAATATTTCAGGGACTTTAAATCAAACTTTGATTCAGCTTATCACAAGTCTCTTGCAATTTGTTGGAACTATTTA
TTTCATGTTGACCATCTCTTGGCAGTTGGCACTCGTCGTCTTTATCACAGTTCCTTTGGCAATGATTACGGTAAGGATTG
TCGCACCTTTATCGCAAAAATTCTTTGCGGAACAACAAAAAAATCTGGGATTATTGAATGACCAAATTGAAGAAAATTAT
GCAGGGCATGCGGTCATTAAAACATTCAATCATGAAGCCTCAGCTGAAAAAGAATTCGCAAAAAGAAATGATAATTTTTA
TAAATCAGCTTGGAAAGCTCAATTTGTATCGACTTTGATTTATCCAACCATGCGATTTATCAATAATTTAGATTACTTAG
CCATGGCCGTAATTGGTGGTCTTAAAGTTATTTCAGGGACGGTTAATCTCGGAGATGTTCAAGCCATGTTGCAATATACC
AATCAATTTGCACAGCCAATCACAAATATCTCGAATATGCTCAATACCATTCAGGCTACAGTTGCGTCAGCCGAACGAAT
TTTTGAAGTATTAGATGAAAAAGAAATGACTGACGGAATTCCTGTCAGTGAAAAAGTTGCTGACGAAAGTTCAAAAAAAG
CTGTCAGTAATTTAGGAGCGACTGACAAGACTGATTTCATCAATTTTGACCAAGTCGCATTTTCTTATAATGAAAATCAA
TCCTTAATGACAGATGTTAATTTTTCCGTTGAAGTTGGGCAAATGATTGCCATTGTGGGACCAACTGGAGCAGGTAAAAC
AACAATGATTAACTTGCTCGAACGATTTTACGATGTCACTTCGGGAAAAATTTTACTTGAAGGAAAAGACATTCGCGAAA
TTAACCGTGAACAATTACGTGGACGAATGGCAATGGTTTTACAAGAAACCTGGTTGTTCTCAGGGACAATTATGGATAAT
TTACAGTATGGTCGTCTTGAAGCAACACAAGAAGAAGTGATTCAAGCAGCTAAAATGGCACATGCTGATGAATTTATCAC
CGCTTTACCTCAAGGTTATCAAACCCTTTTGAATGAAGCCGCAAGCAATATTTCTCAGGGTCAAAGGCAGTTATTAACCA
TCGCCCGTGCCTTTTTAGCAAATCCAGAAATATTGATTTTGGATGAAGCCACATCCAGTGTAGATACAAGAACGGAGCGC
CTAATTCAATCAGCGATGAATCGTCTATTAAAAGGACGGACAAGCTTTGTCGTTGCTCACCGTTTATCAACTATTCGTGA
TGCCAATCAGATTTTGGTTATGGAAAATGGAAATATTGTGGAAATGGGGAACCATGAAAGTCTCCTTAAAGAAAACGGAT
TATATGCCAGCCTTTATAATTCGCAATTTGCAAAATAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(404-552)

ABC transporter transmembrane region (ABC_membrane)

(44-326)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.472

94.88

0.384

Multiple sequence alignment