Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   A8714_RS20280 Genome accession   NZ_CP015853
Coordinates   3994808..3995275 (-) Length   155 a.a.
NCBI ID   WP_000381746.1    Uniprot ID   Q8X892
Organism   Escherichia coli strain ATCC 43889     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3989808..4000275
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A8714_RS20255 (A8714_20390) rpsG 3989949..3990419 (+) 471 WP_001138043.1 30S ribosomal protein S7 -
  A8714_RS20260 (A8714_20395) fusA 3990516..3992630 (+) 2115 WP_000124700.1 elongation factor G -
  A8714_RS20265 (A8714_20400) tuf 3992701..3993885 (+) 1185 WP_000031783.1 elongation factor Tu -
  A8714_RS20270 (A8714_20405) bfd 3994068..3994262 (+) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  A8714_RS20275 (A8714_20410) bfr 3994335..3994811 (+) 477 WP_000675516.1 bacterioferritin -
  A8714_RS20280 (A8714_20415) pilD 3994808..3995275 (-) 468 WP_000381746.1 A24 family peptidase Machinery gene
  A8714_RS20290 (A8714_20425) rpsJ 3995654..3995965 (+) 312 WP_001181004.1 30S ribosomal protein S10 -
  A8714_RS20295 (A8714_20430) rplC 3995998..3996627 (+) 630 WP_000579833.1 50S ribosomal protein L3 -
  A8714_RS20300 (A8714_20435) rplD 3996638..3997243 (+) 606 WP_000424395.1 50S ribosomal protein L4 -
  A8714_RS20305 (A8714_20440) rplW 3997240..3997542 (+) 303 WP_000617544.1 50S ribosomal protein L23 -
  A8714_RS20310 (A8714_20445) rplB 3997560..3998381 (+) 822 WP_000301864.1 50S ribosomal protein L2 -
  A8714_RS20315 (A8714_20450) rpsS 3998398..3998676 (+) 279 WP_001138117.1 30S ribosomal protein S19 -
  A8714_RS20320 (A8714_20455) rplV 3998691..3999023 (+) 333 WP_000447529.1 50S ribosomal protein L22 -
  A8714_RS20325 (A8714_20460) rpsC 3999041..3999742 (+) 702 WP_000529945.1 30S ribosomal protein S3 -
  A8714_RS20330 (A8714_20465) rplP 3999755..4000165 (+) 411 WP_000941212.1 50S ribosomal protein L16 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17099.29 Da        Isoelectric Point: 8.1343

>NTDB_id=155377 A8714_RS20280 WP_000381746.1 3994808..3995275(-) (pilD) [Escherichia coli strain ATCC 43889]
MDTTLPFLILYACLSALLFFWDAKHGLLPDRFTCPLLWSGLLFYQVCHPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHSWAFLPRLVFLAASFACGAVVIGLLMRGKESLKNPLPFGPFLAAAGFVIGWDSLLIGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=155377 A8714_RS20280 WP_000381746.1 3994808..3995275(-) (pilD) [Escherichia coli strain ATCC 43889]
ATGGACACTACCCTTCCCTTTCTAATTTTGTACGCTTGTTTATCAGCCCTACTTTTTTTCTGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACGTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTATCAAGTTTGTCATCCTGATGGTTTAGCCG
ATGCGTTATGGGGGGCAATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGCCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGCGCCTGGCATTCATGGGCCTTCTTACCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTATTGGTCTGCTCATGAGAGGAAAAGAATCATTAAAAAACCCGCTGC
CTTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTATAGGCTGGGATAGTTTGCTGATAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(11-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8X892

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

43.478

89.032

0.387