Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | A8L40_RS02855 | Genome accession | NZ_CP015831 |
| Coordinates | 567909..568376 (-) | Length | 155 a.a. |
| NCBI ID | WP_000381746.1 | Uniprot ID | Q8X892 |
| Organism | Escherichia coli O157 strain 644-PT8 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 562909..573376
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A8L40_RS02830 | rpsG | 563050..563520 (+) | 471 | WP_001138043.1 | 30S ribosomal protein S7 | - |
| A8L40_RS02835 | fusA | 563617..565731 (+) | 2115 | WP_000124700.1 | elongation factor G | - |
| A8L40_RS02840 | tuf | 565802..566986 (+) | 1185 | WP_000031783.1 | elongation factor Tu | - |
| A8L40_RS02845 | bfd | 567169..567363 (+) | 195 | WP_000289090.1 | bacterioferritin-associated ferredoxin | - |
| A8L40_RS02850 | bfr | 567436..567912 (+) | 477 | WP_000675516.1 | bacterioferritin | - |
| A8L40_RS02855 | pilD | 567909..568376 (-) | 468 | WP_000381746.1 | A24 family peptidase | Machinery gene |
| A8L40_RS02865 | rpsJ | 568755..569066 (+) | 312 | WP_001181004.1 | 30S ribosomal protein S10 | - |
| A8L40_RS02870 | rplC | 569099..569728 (+) | 630 | WP_000579833.1 | 50S ribosomal protein L3 | - |
| A8L40_RS02875 | rplD | 569739..570344 (+) | 606 | WP_000424395.1 | 50S ribosomal protein L4 | - |
| A8L40_RS02880 | rplW | 570341..570643 (+) | 303 | WP_000617544.1 | 50S ribosomal protein L23 | - |
| A8L40_RS02885 | rplB | 570661..571482 (+) | 822 | WP_000301864.1 | 50S ribosomal protein L2 | - |
| A8L40_RS02890 | rpsS | 571499..571777 (+) | 279 | WP_001138117.1 | 30S ribosomal protein S19 | - |
| A8L40_RS02895 | rplV | 571792..572124 (+) | 333 | WP_000447529.1 | 50S ribosomal protein L22 | - |
| A8L40_RS02900 | rpsC | 572142..572843 (+) | 702 | WP_000529945.1 | 30S ribosomal protein S3 | - |
| A8L40_RS02905 | rplP | 572856..573266 (+) | 411 | WP_000941212.1 | 50S ribosomal protein L16 | - |
Sequence
Protein
Download Length: 155 a.a. Molecular weight: 17099.29 Da Isoelectric Point: 8.1343
>NTDB_id=154775 A8L40_RS02855 WP_000381746.1 567909..568376(-) (pilD) [Escherichia coli O157 strain 644-PT8]
MDTTLPFLILYACLSALLFFWDAKHGLLPDRFTCPLLWSGLLFYQVCHPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHSWAFLPRLVFLAASFACGAVVIGLLMRGKESLKNPLPFGPFLAAAGFVIGWDSLLIGR
MDTTLPFLILYACLSALLFFWDAKHGLLPDRFTCPLLWSGLLFYQVCHPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHSWAFLPRLVFLAASFACGAVVIGLLMRGKESLKNPLPFGPFLAAAGFVIGWDSLLIGR
Nucleotide
Download Length: 468 bp
>NTDB_id=154775 A8L40_RS02855 WP_000381746.1 567909..568376(-) (pilD) [Escherichia coli O157 strain 644-PT8]
ATGGACACTACCCTTCCCTTTCTAATTTTGTACGCTTGTTTATCAGCCCTACTTTTTTTCTGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACGTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTATCAAGTTTGTCATCCTGATGGTTTAGCCG
ATGCGTTATGGGGGGCAATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGCCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGCGCCTGGCATTCATGGGCCTTCTTACCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTATTGGTCTGCTCATGAGAGGAAAAGAATCATTAAAAAACCCGCTGC
CTTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTATAGGCTGGGATAGTTTGCTGATAGGCCGTTAA
ATGGACACTACCCTTCCCTTTCTAATTTTGTACGCTTGTTTATCAGCCCTACTTTTTTTCTGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACGTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTATCAAGTTTGTCATCCTGATGGTTTAGCCG
ATGCGTTATGGGGGGCAATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGCCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGCGCCTGGCATTCATGGGCCTTCTTACCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTATTGGTCTGCTCATGAGAGGAAAAGAATCATTAAAAAACCCGCTGC
CTTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTATAGGCTGGGATAGTTTGCTGATAGGCCGTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
43.478 |
89.032 |
0.387 |