Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   BBEV_RS05575 Genome accession   NZ_CP012502
Coordinates   1224600..1226978 (+) Length   792 a.a.
NCBI ID   WP_069364569.1    Uniprot ID   A0A1D7QU31
Organism   Salisediminibacterium beveridgei strain MLTeJB     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1219600..1231978
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBEV_RS05555 (BBEV_1111) yajC 1220432..1220695 (+) 264 WP_069364566.1 preprotein translocase subunit YajC -
  BBEV_RS05560 (BBEV_1112) - 1220785..1221669 (+) 885 WP_069364567.1 DUF368 domain-containing protein -
  BBEV_RS05565 (BBEV_1113) - 1221659..1221997 (+) 339 WP_069364568.1 post-transcriptional regulator -
  BBEV_RS17125 (BBEV_1114) secD 1222120..1223439 (+) 1320 WP_084007244.1 protein translocase subunit SecD -
  BBEV_RS17130 (BBEV_1115) secF 1223429..1224394 (+) 966 WP_084007245.1 protein translocase subunit SecF -
  BBEV_RS05575 (BBEV_1116) recJ 1224600..1226978 (+) 2379 WP_069364569.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  BBEV_RS05580 (BBEV_1117) - 1227039..1227551 (+) 513 WP_069364570.1 adenine phosphoribosyltransferase -
  BBEV_RS05585 (BBEV_1118) - 1227751..1229721 (+) 1971 WP_407690240.1 RelA/SpoT family protein -
  BBEV_RS17995 - 1229723..1229953 (+) 231 WP_407690241.1 ACT domain-containing protein -
  BBEV_RS05590 (BBEV_1119) dtd 1229987..1230436 (+) 450 WP_069364571.1 D-aminoacyl-tRNA deacylase -

Sequence

Protein


Download         Length: 792 a.a.        Molecular weight: 88506.08 Da        Isoelectric Point: 4.9930

>NTDB_id=154748 BBEV_RS05575 WP_069364569.1 1224600..1226978(+) (recJ) [Salisediminibacterium beveridgei strain MLTeJB]
MLQSQAKWLIPEWSEDQVKELAELTGLSHIAARFFVRRGITAKEDVMSFLHMDHRSLHDPFLLKGMEKTVERIIRAIADK
EKILIFGDYDADGVTSTSMMYLTLKELDAVVSYYIPNRFTEGYGPNESAFRQAKDEGVALIITVDTGISGVHEALVAKEL
GVDLIITDHHEPPPALPDAFSVINPKQPGCSYPNPNLAGAGVAFKVIHALTGDVPDHLLDLVAIGTIADLVPLTGENRFL
AKAGIEAIRHDCRPGVKALLNKAGADISELNEETIGFLIGPRLNAAGRLDSADPAAALLITADFSEAEELALFVDDLNRE
RQAIVKEISEEAIAQVEEQDIPPVLIVGKSGWNPGVIGIVASRLVETYYRPVIVLSFDEEKGVAKGSARSIEGFDMFKSL
STCRDILPHFGGHPMAAGLTMNLQDVDDLRGRLSELALETMSEDDWIRKLHVDLPVAIHEVTLEAIEDLQSMAPYGIGNP
APKVMLDEVQISAMRQIGATGDHLKFTLRDDASDRELDAIAFRKGELANAISMMSRLSVVGKLSINEWNGNRKPQFMVED
LRVSDWQLFDYRGNKKLFRQQHLLKRDKVTAVSFSHSFKSLTQELPEAWSRIELKGSLPDEEQVSQLKEAQEVVFIDLPI
NLNQVEAVLDKMEVLEKLYPVFLHEDSGRINTVPRREQFTELYKLFVHQGKIDMKRHAQTISKRKGWSMDHIRFMCKVFS
ELEFVTIENGIVHAVSKPDKRVLTDSALYQESLAKQGVEENLYYSSSTELKRWIDDVRNNRVAQLEDSSARQ

Nucleotide


Download         Length: 2379 bp        

>NTDB_id=154748 BBEV_RS05575 WP_069364569.1 1224600..1226978(+) (recJ) [Salisediminibacterium beveridgei strain MLTeJB]
ATGCTACAATCACAGGCGAAATGGTTGATTCCCGAATGGTCGGAGGATCAGGTGAAGGAACTGGCTGAATTGACGGGGTT
ATCCCATATTGCCGCCCGCTTTTTTGTCCGGCGTGGCATCACTGCAAAAGAAGATGTGATGTCGTTTTTACATATGGACC
ATCGTTCCCTGCATGATCCATTCCTGTTGAAAGGGATGGAGAAAACGGTTGAACGAATCATTCGAGCGATTGCAGATAAA
GAGAAAATACTGATTTTTGGAGATTATGATGCAGATGGTGTTACGAGTACATCCATGATGTACCTGACGCTTAAAGAACT
GGATGCGGTGGTCAGTTACTATATTCCAAATCGTTTTACGGAAGGCTATGGACCAAACGAATCTGCATTTCGACAGGCCA
AAGACGAAGGCGTTGCGTTAATCATAACGGTCGATACCGGGATTTCGGGCGTACATGAAGCGCTTGTCGCAAAAGAACTG
GGTGTTGATCTGATTATTACGGATCATCACGAACCGCCGCCAGCATTGCCCGATGCGTTTTCTGTCATCAATCCGAAACA
GCCGGGCTGCAGCTATCCGAATCCGAATCTCGCAGGAGCAGGTGTGGCATTCAAGGTCATTCATGCCTTGACCGGAGATG
TCCCGGATCACCTCCTGGACCTGGTTGCCATTGGCACAATTGCCGATCTCGTGCCACTTACAGGGGAAAACCGTTTCCTC
GCAAAAGCGGGGATCGAGGCGATCCGTCACGATTGCCGCCCGGGAGTGAAAGCACTCCTGAATAAAGCAGGTGCGGACAT
CAGTGAACTGAACGAAGAGACTATCGGATTTCTGATCGGTCCAAGGCTGAATGCTGCAGGAAGATTGGATTCTGCGGATC
CAGCGGCGGCACTCTTGATAACCGCTGATTTTTCTGAAGCGGAAGAGCTGGCGCTTTTTGTCGATGATTTGAACCGCGAG
CGACAGGCCATTGTCAAAGAAATCAGTGAAGAAGCGATTGCTCAGGTGGAGGAGCAGGACATTCCGCCGGTGTTGATTGT
AGGAAAAAGTGGATGGAATCCGGGTGTCATCGGGATTGTTGCAAGCAGACTGGTCGAAACCTATTATCGACCGGTGATTG
TGCTCAGTTTCGATGAGGAAAAAGGCGTCGCAAAAGGCTCTGCGAGAAGTATCGAAGGCTTTGATATGTTCAAGTCACTA
TCCACTTGCCGTGATATTCTGCCTCATTTTGGCGGACATCCGATGGCAGCGGGGCTGACGATGAACCTGCAGGATGTCGA
TGATTTACGGGGACGATTATCTGAGCTGGCGTTGGAGACCATGTCAGAGGATGACTGGATCCGAAAACTCCACGTGGATC
TGCCGGTGGCTATACACGAAGTGACGCTTGAAGCCATTGAGGACCTTCAAAGCATGGCGCCCTATGGGATCGGCAACCCC
GCACCGAAAGTAATGCTTGATGAGGTTCAAATCAGTGCGATGCGTCAAATTGGTGCAACGGGAGATCATTTGAAATTTAC
ACTTCGAGATGATGCGTCAGACAGAGAGCTGGATGCCATTGCTTTTCGAAAAGGAGAGCTGGCGAATGCCATTTCCATGA
TGTCACGATTATCCGTTGTAGGAAAACTCAGTATCAATGAGTGGAACGGGAATCGAAAACCACAATTCATGGTGGAAGAT
CTTCGGGTGTCAGATTGGCAGCTGTTTGATTACCGCGGAAATAAAAAATTATTTCGTCAGCAGCACTTGTTAAAACGCGA
TAAAGTGACTGCCGTATCATTCAGTCATTCATTTAAAAGCCTGACACAAGAACTGCCTGAAGCCTGGTCGCGTATTGAAT
TAAAGGGGAGTTTGCCTGATGAAGAGCAGGTGAGCCAGCTGAAAGAAGCCCAGGAAGTAGTTTTTATCGATCTGCCAATC
AACCTGAATCAGGTGGAGGCTGTACTTGATAAAATGGAAGTTCTGGAGAAATTATATCCGGTCTTTCTTCATGAGGATAG
CGGCAGAATCAATACAGTTCCAAGGCGGGAACAGTTTACAGAGTTATATAAACTGTTTGTGCATCAGGGGAAGATTGATA
TGAAACGTCACGCCCAAACGATCAGTAAACGCAAGGGCTGGTCCATGGATCATATTCGGTTCATGTGTAAGGTGTTTTCT
GAGCTGGAGTTTGTTACAATTGAAAATGGCATTGTACATGCTGTTTCCAAACCGGATAAACGGGTGTTAACCGATTCGGC
ATTGTACCAGGAAAGTTTGGCAAAACAAGGGGTGGAGGAAAACTTGTATTATTCCTCAAGCACTGAATTGAAGCGATGGA
TCGATGATGTCAGAAACAATCGCGTTGCTCAATTGGAAGATTCTTCTGCCCGCCAATGA

Domains

Predicted by InterproScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(567-774)

RecJ OB domain (RecJ_OB)

(452-560)

DHH family (DHH)

(82-226)

DHHA1 domain (DHHA1)

(315-435)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1D7QU31

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

49.098

97.98

0.481

Multiple sequence alignment