Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   ACN91_RS05920 Genome accession   NZ_CP012483
Coordinates   1137316..1139652 (+) Length   778 a.a.
NCBI ID   WP_053563620.1    Uniprot ID   A0A9X7GL07
Organism   Bacillus cereus strain NJ-W     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1132316..1144652
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN91_RS05900 (ACN91_05900) - 1133722..1134138 (+) 417 WP_000704116.1 Rrf2 family transcriptional regulator -
  ACN91_RS05905 (ACN91_05905) - 1134174..1135319 (+) 1146 WP_053563619.1 cysteine desulfurase family protein -
  ACN91_RS05910 (ACN91_05910) mnmA 1135336..1136451 (+) 1116 WP_001038010.1 tRNA 2-thiouridine(34) synthase MnmA -
  ACN91_RS05915 (ACN91_05915) - 1136561..1137220 (+) 660 WP_000066411.1 tetratricopeptide repeat protein -
  ACN91_RS05920 (ACN91_05920) recD2 1137316..1139652 (+) 2337 WP_053563620.1 ATP-dependent RecD-like DNA helicase Machinery gene
  ACN91_RS05925 (ACN91_05925) - 1139780..1139968 (+) 189 WP_000469281.1 hypothetical protein -
  ACN91_RS05930 (ACN91_05930) - 1139987..1140115 (+) 129 WP_001053553.1 YrzQ family protein -
  ACN91_RS05935 (ACN91_05935) - 1140162..1140374 (-) 213 WP_000242539.1 hypothetical protein -
  ACN91_RS05940 (ACN91_05940) - 1140551..1141618 (+) 1068 WP_000793129.1 AI-2E family transporter -
  ACN91_RS05945 (ACN91_05945) - 1141663..1142007 (-) 345 WP_053563621.1 PH domain-containing protein -

Sequence

Protein


Download         Length: 778 a.a.        Molecular weight: 87537.04 Da        Isoelectric Point: 5.2613

>NTDB_id=154699 ACN91_RS05920 WP_053563620.1 1137316..1139652(+) (recD2) [Bacillus cereus strain NJ-W]
MGNQHAMDLFEEEKKFIKAQVLHTIFHNEENLYSVVSMKVIETNETYDEKKVMINGHFPRMHEDEVFTLTGHFKDHPKYG
KQYMVETFKKELPQTKAGMVQYLASDLFKGIGKRTAEKIVDHLGEHAISKIMDDPEALNGVVNKQKAQEIYETIVEHQGL
EKVMSFLNGYGFGTKLSIKIYQQYKEMTLEVIRNNPYQLIEEVDGIGFGRADDIGRALGISGNHDDRVRAGCFYTLENVS
LQLGHVYMRKDQLVRETMSLLNNQEGRVTEEDIIGCIETMQSEGKVIIEEDRVYLATLFYSEKGVVKSIRRLMNQEETPS
FPEAEVLKTLGEIEEQLNVQYAPFQQEAIQTALHKPMMLLTGGPGTGKTTVIKGIVEMYASLHGLSLNPNEYSDDNPFPI
LLTAPTGRAAKRMSESTGLPACTIHRLLGWTPEGSFQRNETDPVQGKLLIIDEFSMVDIWLANQLFKSLPTNIQVIVVGD
EDQLPSVGPGQVLKDLLNAGAVPTVKLTEIYRQAEGSSVIQLAHAIKDGTLPPDLAQNKKDRSFISCTGAQIVEVVKKVC
ENAKTKGFSARDVQVLAPMYRGPAGINVLNEALQQVFNPKREKSKEIQYGDVVYRRGDKVLQLVNQPESQVFNGDIGEIV
SVFYAKENVEQQDMIIVSFDGIEVTYTKPDLNQITHAYCCSIHKSQGSEFPIVIMPIVKSYNRMLRRNLIYTGITRSKKF
LIICGEEVAFQSGVNRLDDAMRQTTLASRLQESQGEVQMVTVNGEEMDVENISPYDFM

Nucleotide


Download         Length: 2337 bp        

>NTDB_id=154699 ACN91_RS05920 WP_053563620.1 1137316..1139652(+) (recD2) [Bacillus cereus strain NJ-W]
ATGGGAAATCAACATGCAATGGATTTGTTTGAGGAAGAGAAAAAATTTATAAAAGCGCAAGTTCTTCATACCATTTTCCA
CAACGAAGAAAACCTCTATTCCGTTGTCAGTATGAAAGTCATTGAAACGAATGAAACGTATGACGAAAAGAAAGTAATGA
TAAACGGTCATTTTCCCCGCATGCATGAAGATGAAGTGTTTACATTGACAGGTCACTTTAAGGACCATCCAAAGTATGGA
AAACAATATATGGTTGAAACATTTAAAAAAGAATTGCCGCAAACAAAAGCAGGTATGGTGCAATATTTAGCGAGTGATTT
ATTTAAAGGGATAGGAAAGCGTACAGCGGAAAAAATTGTGGATCATCTCGGGGAACATGCTATTTCTAAAATTATGGATG
ACCCTGAGGCGTTAAATGGTGTTGTTAACAAACAAAAGGCTCAGGAAATATATGAGACAATTGTTGAACATCAAGGATTA
GAGAAAGTAATGAGCTTTTTAAATGGTTACGGTTTTGGAACGAAACTTTCTATTAAGATTTACCAGCAATATAAAGAGAT
GACATTAGAAGTGATTCGTAATAATCCGTATCAACTTATCGAAGAAGTGGACGGGATTGGTTTTGGACGAGCGGATGATA
TAGGGCGTGCGTTAGGGATATCGGGTAATCACGACGATCGTGTACGAGCGGGATGTTTTTACACATTAGAGAATGTCTCA
TTGCAACTTGGTCACGTTTATATGAGGAAAGATCAACTTGTAAGAGAAACGATGTCACTTTTAAACAATCAAGAAGGAAG
AGTGACTGAAGAAGATATTATAGGTTGTATTGAAACGATGCAAAGTGAAGGGAAAGTCATCATAGAAGAAGATCGAGTGT
ATTTAGCAACTTTATTCTACTCTGAAAAAGGTGTTGTAAAGTCTATTCGTCGATTGATGAATCAAGAGGAAACACCTTCA
TTTCCTGAAGCAGAAGTGTTAAAAACATTAGGTGAAATTGAAGAACAGTTGAATGTACAATATGCACCATTTCAGCAAGA
AGCGATTCAAACGGCACTTCATAAACCGATGATGTTATTAACAGGTGGACCAGGAACAGGAAAAACAACCGTTATTAAAG
GGATTGTTGAAATGTATGCGTCACTTCACGGATTATCGTTAAATCCGAATGAATACAGTGATGATAATCCATTTCCAATA
CTATTAACAGCTCCAACAGGAAGAGCAGCGAAGCGGATGAGTGAATCGACAGGACTTCCAGCTTGCACAATTCACCGTTT
GCTTGGCTGGACGCCAGAAGGATCTTTCCAACGTAATGAAACGGATCCTGTCCAAGGTAAGCTCCTTATTATCGATGAAT
TTTCAATGGTTGATATTTGGCTCGCAAATCAGCTATTTAAGTCGCTACCAACGAATATTCAAGTTATCGTTGTAGGTGAT
GAAGATCAGTTGCCATCTGTAGGACCTGGACAAGTATTAAAAGATTTATTAAATGCAGGTGCAGTTCCGACAGTGAAGCT
TACTGAAATTTATCGTCAAGCAGAAGGCTCATCTGTTATTCAACTTGCCCATGCGATCAAAGACGGCACACTCCCGCCAG
ATTTAGCGCAAAATAAAAAAGATCGTTCGTTTATCAGCTGTACAGGGGCTCAAATTGTTGAGGTTGTGAAAAAAGTTTGC
GAAAACGCTAAAACAAAAGGCTTTAGTGCAAGGGATGTTCAAGTATTAGCACCGATGTACCGCGGGCCTGCTGGTATTAA
TGTATTAAACGAAGCGCTGCAACAAGTATTTAACCCGAAAAGGGAAAAGAGTAAAGAAATCCAGTACGGTGATGTTGTAT
ACCGAAGAGGCGATAAAGTACTGCAACTCGTTAATCAGCCGGAGAGCCAAGTGTTTAATGGGGATATCGGAGAAATTGTT
TCGGTGTTTTATGCGAAAGAAAACGTTGAGCAACAAGATATGATTATCGTTTCATTTGATGGAATTGAGGTAACGTATAC
AAAGCCGGATTTAAATCAAATTACACATGCATATTGTTGTTCGATTCATAAATCACAAGGTAGTGAATTTCCGATTGTTA
TTATGCCGATTGTGAAAAGTTACAACCGTATGTTACGCCGTAATTTAATTTACACGGGCATTACAAGAAGTAAGAAGTTC
CTTATTATTTGCGGGGAGGAAGTAGCTTTCCAATCTGGTGTAAATCGCCTTGATGATGCAATGCGTCAAACAACTTTAGC
TAGTCGCTTGCAGGAATCACAAGGAGAAGTACAGATGGTCACAGTTAATGGCGAGGAAATGGACGTGGAAAACATTTCAC
CGTATGATTTCATGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(156-247)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(676-724)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(589-659)

AAA domain (AAA_30)

(341-548)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

56.89

100

0.578

Multiple sequence alignment