Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   AMR71_RS11945 Genome accession   NZ_CP012482
Coordinates   2340341..2341120 (-) Length   259 a.a.
NCBI ID   WP_041108981.1    Uniprot ID   -
Organism   Bacillus altitudinis strain NJ-V2     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2335341..2346120
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AMR71_RS11915 (AMR71_11935) fliH 2335454..2336218 (-) 765 WP_024720351.1 flagellar assembly protein FliH -
  AMR71_RS11920 (AMR71_11940) fliG 2336211..2337227 (-) 1017 WP_034281776.1 flagellar motor switch protein FliG -
  AMR71_RS11925 (AMR71_11945) fliF 2337239..2338831 (-) 1593 WP_017359091.1 flagellar basal-body MS-ring/collar protein FliF -
  AMR71_RS11930 (AMR71_11950) fliE 2338882..2339199 (-) 318 WP_007499609.1 flagellar hook-basal body complex protein FliE -
  AMR71_RS11935 (AMR71_11955) flgC 2339211..2339663 (-) 453 WP_007499610.1 flagellar basal body rod protein FlgC -
  AMR71_RS11940 (AMR71_11960) flgB 2339663..2340052 (-) 390 WP_017359092.1 flagellar basal body rod protein FlgB -
  AMR71_RS11945 (AMR71_11965) codY 2340341..2341120 (-) 780 WP_041108981.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  AMR71_RS11950 (AMR71_11970) hslU 2341155..2342555 (-) 1401 WP_057079562.1 HslU--HslV peptidase ATPase subunit -
  AMR71_RS11955 (AMR71_11975) hslV 2342572..2343117 (-) 546 WP_007499614.1 ATP-dependent protease subunit HslV -
  AMR71_RS11960 (AMR71_11980) xerC 2343132..2344049 (-) 918 WP_007499616.1 tyrosine recombinase XerC -
  AMR71_RS11965 (AMR71_11985) trmFO 2344112..2345416 (-) 1305 WP_007499618.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29003.26 Da        Isoelectric Point: 4.7176

>NTDB_id=154657 AMR71_RS11945 WP_041108981.1 2340341..2341120(-) (codY) [Bacillus altitudinis strain NJ-V2]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENARMKKMLEDRQFPEEYTKSLF
NVPETSSNLDINSEYTAFPIENRDLFQSGLTTIVPIIGGGDRLGTLILSRLQDTFKDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=154657 AMR71_RS11945 WP_041108981.1 2340341..2341120(-) (codY) [Bacillus altitudinis strain NJ-V2]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCGATGCTGCAAGATGCAGCGGGGAAACCGGTTAATTTTAAAGAAAT
GGCAGAAACACTGAGAGATGTCATTGATTCAAACATTTTCGTATTAAGCAGAAGAGGGAAGCTTCTTGGCTACTCTATTA
ACCAGCAGATTGAAAATGCACGTATGAAAAAAATGCTGGAAGATCGTCAGTTCCCTGAAGAATATACAAAAAGCTTATTC
AATGTCCCTGAAACATCTTCAAACCTTGACATCAACAGTGAGTACACAGCTTTCCCGATTGAGAACCGTGATTTATTCCA
ATCCGGTTTGACAACGATTGTGCCAATTATCGGAGGCGGAGACCGCTTAGGGACGTTAATCCTTTCTCGTTTGCAAGATA
CATTCAAAGATGATGATTTAATTCTTGCTGAATACGGCGCAACAGTTGTTGGAATGGAGATTCTTCGCGAGAAAGCGGAA
GAAATTGAAGAAGAAGCAAGAAGTAAAGCGGTTGTTCAAATGGCAATCAGTTCTCTTTCATATAGTGAGCTTGAGGCGAT
TGAGCATATCTTTGAAGAACTTGATGGCAACGAAGGGCTGCTTGTGGCAAGTAAGATTGCTGACCGTGTAGGAATCACTC
GTTCAGTGATCGTAAACGCACTTCGTAAATTAGAAAGTGCAGGCGTTATTGAATCTCGTTCTCTTGGAATGAAGGGAACA
TACATCAAAGTATTAAACAACAAATTTTTAATTGAACTTGAAAATTTAAAATCTCACTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

96.525

100

0.965
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.638

98.069

0.467

Multiple sequence alignment