Detailed information
Bioinformatically predicted
Overview
| Name | clpC | Type | Regulator |
| Locus tag | A7B19_RS39730 | Genome accession | NZ_CP015726 |
| Coordinates | 9295788..9298334 (+) | Length | 848 a.a. |
| NCBI ID | WP_063733518.1 | Uniprot ID | - |
| Organism | Streptomyces sp. RTd22 | ||
| Function | degradation of ComK; degradation of DegU (predicted from homology) Competence regulation |
||
Genomic Context
Location: 9290788..9303334
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A7B19_RS39720 | - | 9291793..9293262 (+) | 1470 | WP_063733437.1 | sensor histidine kinase | - |
| A7B19_RS39725 | - | 9293328..9295376 (-) | 2049 | WP_063733435.1 | non-reducing end alpha-L-arabinofuranosidase family hydrolase | - |
| A7B19_RS39730 | clpC | 9295788..9298334 (+) | 2547 | WP_063733518.1 | ATP-dependent Clp protease ATP-binding subunit | Regulator |
| A7B19_RS39735 | - | 9298367..9298888 (-) | 522 | WP_063733433.1 | hypothetical protein | - |
| A7B19_RS39740 | - | 9298994..9300526 (-) | 1533 | WP_063733431.1 | GMC family oxidoreductase | - |
| A7B19_RS39745 | - | 9300724..9301350 (+) | 627 | WP_063733429.1 | hypothetical protein | - |
| A7B19_RS53285 | - | 9301411..9301716 (-) | 306 | WP_234365235.1 | helix-turn-helix domain-containing protein | - |
| A7B19_RS48475 | - | 9302042..9302431 (+) | 390 | WP_079152227.1 | ANTAR domain-containing protein | - |
| A7B19_RS39755 | - | 9302401..9302811 (-) | 411 | WP_107451112.1 | VOC family protein | - |
Sequence
Protein
Download Length: 848 a.a. Molecular weight: 92181.29 Da Isoelectric Point: 4.8574
>NTDB_id=154657 A7B19_RS39730 WP_063733518.1 9295788..9298334(+) (clpC) [Streptomyces sp. RTd22]
MNSGFMGPGGFGPDPFEEYLTRFLGGGPRGPRQIDIGRLMSDPARQLVADAVSYAAEHGSTDLDTKHLLRAALTAEPTRG
LLAGAGADTDALAAQIDRTSGDGPPQNRLTVTPAVKRALLDAHDLARATGASYIGPEHVLGALVSNPDSAAGRILNTLHF
DPTAAQQGPQAAPGQPPVTATGQQPGGRAQDTPTLDKFSRDLTELAHEGRIDPVIGRGEEIEQTVEVLSRRGKNNPVLIG
DAGVGKTAIVEGLAQRVTEGDVPDILLGRRVVALDLSAVVAGTRYRGDFEERLSGIIEEIRTHSEQLIVFIDELHTVVGA
GTGGGEGGSMDASNMLKPALARGELHVIGATTLEEYRRHIEKDAALARRFQPVLVPEPTAADAVEILRGLCDRYEAHHQV
RFTDEALCAAVELSDRYLTDRFLPDKAIDLMDQAGARVRLRSRTKGTDVRALEREVEQLTRDKDQAVAAEEYERATELRD
RIGELNARIEAGDGTEPDDGQSLEVTAEDIAEVVSRQTGIPVSSLTQEEKDRLLGLEEHLRQRVIGQDEAVGAVAEAVLR
SRTGLADPGRPTGSFLFLGSTGVGKTELARALAEALFGSEELMVRLDMSEYQERHTVSRLVGAPPGYVGHEEAGQLTEAV
RRRPYSLLLLDEVEKAHPDVFNILLQVLDDGRLTDAQGRTVDFRNTVVVMTSNLGSEAIGGTALGFGATDAETGEQARRE
RVLRPLREHFRPEFLNRIDEIVIFRQLDDEQLRRITDVMLEETRRRLHAQDIAVEFAPEAIDWLARHGHQPEYGARPLRR
TIQREVDNRLSRMLLDGGLASGERIRVEVADDGQLAFHTGAASKARQP
MNSGFMGPGGFGPDPFEEYLTRFLGGGPRGPRQIDIGRLMSDPARQLVADAVSYAAEHGSTDLDTKHLLRAALTAEPTRG
LLAGAGADTDALAAQIDRTSGDGPPQNRLTVTPAVKRALLDAHDLARATGASYIGPEHVLGALVSNPDSAAGRILNTLHF
DPTAAQQGPQAAPGQPPVTATGQQPGGRAQDTPTLDKFSRDLTELAHEGRIDPVIGRGEEIEQTVEVLSRRGKNNPVLIG
DAGVGKTAIVEGLAQRVTEGDVPDILLGRRVVALDLSAVVAGTRYRGDFEERLSGIIEEIRTHSEQLIVFIDELHTVVGA
GTGGGEGGSMDASNMLKPALARGELHVIGATTLEEYRRHIEKDAALARRFQPVLVPEPTAADAVEILRGLCDRYEAHHQV
RFTDEALCAAVELSDRYLTDRFLPDKAIDLMDQAGARVRLRSRTKGTDVRALEREVEQLTRDKDQAVAAEEYERATELRD
RIGELNARIEAGDGTEPDDGQSLEVTAEDIAEVVSRQTGIPVSSLTQEEKDRLLGLEEHLRQRVIGQDEAVGAVAEAVLR
SRTGLADPGRPTGSFLFLGSTGVGKTELARALAEALFGSEELMVRLDMSEYQERHTVSRLVGAPPGYVGHEEAGQLTEAV
RRRPYSLLLLDEVEKAHPDVFNILLQVLDDGRLTDAQGRTVDFRNTVVVMTSNLGSEAIGGTALGFGATDAETGEQARRE
RVLRPLREHFRPEFLNRIDEIVIFRQLDDEQLRRITDVMLEETRRRLHAQDIAVEFAPEAIDWLARHGHQPEYGARPLRR
TIQREVDNRLSRMLLDGGLASGERIRVEVADDGQLAFHTGAASKARQP
Nucleotide
Download Length: 2547 bp
>NTDB_id=154657 A7B19_RS39730 WP_063733518.1 9295788..9298334(+) (clpC) [Streptomyces sp. RTd22]
ATGAACAGCGGTTTCATGGGGCCGGGAGGCTTCGGACCGGATCCGTTCGAGGAATACCTGACGCGGTTCCTCGGCGGCGG
GCCGCGCGGTCCCCGGCAGATCGACATCGGTCGTCTGATGAGCGACCCCGCCCGGCAACTGGTCGCCGACGCAGTCTCCT
ACGCCGCCGAGCACGGCAGCACCGACCTGGACACCAAGCACCTGCTGCGCGCGGCACTGACCGCGGAACCGACCCGGGGG
CTGCTGGCGGGGGCGGGGGCCGACACCGACGCGCTGGCCGCCCAGATCGACCGTACGAGCGGTGACGGACCGCCGCAGAA
CCGGCTGACCGTCACCCCCGCGGTCAAGCGCGCCCTGCTGGACGCCCACGACCTGGCCCGCGCCACAGGGGCCTCGTACA
TCGGCCCCGAGCACGTCCTCGGGGCGCTGGTCTCCAACCCCGACTCCGCCGCCGGACGCATCCTCAACACCCTTCACTTC
GACCCCACGGCGGCCCAGCAGGGACCGCAGGCCGCGCCGGGGCAGCCGCCGGTCACCGCGACCGGGCAGCAGCCCGGGGG
CCGGGCGCAGGACACGCCCACCCTGGACAAGTTCAGCCGCGACCTGACCGAACTCGCCCATGAGGGTCGCATCGATCCGG
TCATCGGCCGCGGGGAGGAGATCGAACAGACCGTCGAGGTGCTGTCCCGCCGCGGCAAGAACAACCCCGTGCTGATCGGC
GACGCCGGTGTCGGCAAGACCGCCATCGTCGAAGGGCTCGCCCAGCGCGTCACCGAAGGCGATGTCCCCGACATCCTGCT
CGGCCGCCGCGTGGTCGCCCTGGACCTCTCCGCCGTCGTCGCGGGCACCCGCTACCGGGGTGACTTCGAGGAACGGCTGA
GCGGCATCATCGAGGAGATCCGTACGCATTCCGAGCAGCTGATCGTCTTCATCGACGAGCTGCACACCGTCGTCGGCGCG
GGCACGGGCGGCGGCGAGGGCGGCTCCATGGACGCGAGCAACATGCTCAAGCCCGCGCTGGCCCGTGGCGAACTCCATGT
CATCGGCGCCACCACGCTGGAGGAGTACCGCCGCCACATCGAGAAGGACGCGGCACTGGCCCGCCGTTTCCAGCCCGTCC
TGGTGCCCGAGCCCACCGCCGCCGACGCGGTGGAGATCCTGCGGGGCCTGTGCGACCGCTACGAGGCGCATCACCAGGTC
CGCTTCACCGACGAGGCGCTGTGCGCCGCCGTGGAGCTGTCCGACCGCTACCTCACCGACCGGTTCCTGCCCGACAAGGC
CATCGACCTGATGGACCAGGCCGGTGCCCGGGTGCGCTTGCGCTCGCGGACCAAGGGCACCGATGTGCGCGCACTGGAGC
GGGAGGTCGAGCAGCTGACCCGCGACAAGGACCAGGCGGTGGCCGCGGAGGAATACGAGCGGGCCACCGAACTGCGCGAC
CGCATCGGCGAACTGAACGCCCGGATCGAGGCGGGCGACGGCACGGAACCGGACGACGGGCAGAGCCTGGAGGTCACCGC
CGAGGACATCGCCGAAGTGGTGTCCCGGCAGACCGGCATCCCGGTCAGCAGCCTCACCCAGGAGGAGAAGGACCGGCTGC
TCGGTCTGGAGGAACACCTGCGCCAGCGCGTCATCGGGCAGGACGAGGCCGTCGGCGCCGTCGCCGAGGCGGTGCTGCGC
TCCCGGACCGGCCTGGCCGACCCCGGCCGCCCGACCGGGAGCTTCCTCTTCCTCGGATCCACCGGTGTCGGCAAGACGGA
ACTCGCACGGGCCCTGGCCGAGGCGCTGTTCGGCAGCGAAGAGCTGATGGTGCGGCTCGACATGAGCGAGTACCAGGAGC
GCCACACCGTCAGCCGCCTGGTCGGCGCCCCGCCCGGGTACGTCGGCCACGAGGAGGCCGGACAGCTCACCGAGGCCGTG
CGCCGGCGGCCGTACTCGCTGCTGCTGCTGGACGAGGTCGAGAAGGCTCATCCCGATGTCTTCAACATCCTGCTCCAGGT
GCTGGACGACGGGCGTCTCACCGACGCCCAGGGCCGTACGGTCGACTTCCGCAACACCGTCGTCGTGATGACGAGCAACC
TCGGCTCCGAGGCCATCGGTGGCACCGCGCTCGGCTTCGGCGCCACGGATGCCGAGACCGGCGAGCAGGCCCGGCGCGAA
CGCGTCCTGCGCCCGCTGCGCGAGCACTTCCGCCCCGAATTCCTCAACCGCATCGACGAGATCGTCATCTTCCGGCAGCT
CGACGACGAGCAGCTGCGCCGGATCACCGACGTGATGCTGGAGGAGACCCGCCGTCGGCTGCACGCCCAGGACATCGCCG
TCGAGTTCGCCCCGGAGGCCATCGACTGGCTCGCGCGCCACGGCCACCAGCCCGAGTACGGGGCGCGGCCGCTGCGCCGC
ACCATCCAGCGGGAGGTCGACAACCGGCTGTCCCGGATGCTCCTCGACGGCGGCCTCGCCTCCGGCGAGCGGATCCGGGT
GGAGGTCGCGGACGACGGACAACTGGCCTTCCACACCGGCGCGGCCTCGAAGGCGCGGCAGCCCTGA
ATGAACAGCGGTTTCATGGGGCCGGGAGGCTTCGGACCGGATCCGTTCGAGGAATACCTGACGCGGTTCCTCGGCGGCGG
GCCGCGCGGTCCCCGGCAGATCGACATCGGTCGTCTGATGAGCGACCCCGCCCGGCAACTGGTCGCCGACGCAGTCTCCT
ACGCCGCCGAGCACGGCAGCACCGACCTGGACACCAAGCACCTGCTGCGCGCGGCACTGACCGCGGAACCGACCCGGGGG
CTGCTGGCGGGGGCGGGGGCCGACACCGACGCGCTGGCCGCCCAGATCGACCGTACGAGCGGTGACGGACCGCCGCAGAA
CCGGCTGACCGTCACCCCCGCGGTCAAGCGCGCCCTGCTGGACGCCCACGACCTGGCCCGCGCCACAGGGGCCTCGTACA
TCGGCCCCGAGCACGTCCTCGGGGCGCTGGTCTCCAACCCCGACTCCGCCGCCGGACGCATCCTCAACACCCTTCACTTC
GACCCCACGGCGGCCCAGCAGGGACCGCAGGCCGCGCCGGGGCAGCCGCCGGTCACCGCGACCGGGCAGCAGCCCGGGGG
CCGGGCGCAGGACACGCCCACCCTGGACAAGTTCAGCCGCGACCTGACCGAACTCGCCCATGAGGGTCGCATCGATCCGG
TCATCGGCCGCGGGGAGGAGATCGAACAGACCGTCGAGGTGCTGTCCCGCCGCGGCAAGAACAACCCCGTGCTGATCGGC
GACGCCGGTGTCGGCAAGACCGCCATCGTCGAAGGGCTCGCCCAGCGCGTCACCGAAGGCGATGTCCCCGACATCCTGCT
CGGCCGCCGCGTGGTCGCCCTGGACCTCTCCGCCGTCGTCGCGGGCACCCGCTACCGGGGTGACTTCGAGGAACGGCTGA
GCGGCATCATCGAGGAGATCCGTACGCATTCCGAGCAGCTGATCGTCTTCATCGACGAGCTGCACACCGTCGTCGGCGCG
GGCACGGGCGGCGGCGAGGGCGGCTCCATGGACGCGAGCAACATGCTCAAGCCCGCGCTGGCCCGTGGCGAACTCCATGT
CATCGGCGCCACCACGCTGGAGGAGTACCGCCGCCACATCGAGAAGGACGCGGCACTGGCCCGCCGTTTCCAGCCCGTCC
TGGTGCCCGAGCCCACCGCCGCCGACGCGGTGGAGATCCTGCGGGGCCTGTGCGACCGCTACGAGGCGCATCACCAGGTC
CGCTTCACCGACGAGGCGCTGTGCGCCGCCGTGGAGCTGTCCGACCGCTACCTCACCGACCGGTTCCTGCCCGACAAGGC
CATCGACCTGATGGACCAGGCCGGTGCCCGGGTGCGCTTGCGCTCGCGGACCAAGGGCACCGATGTGCGCGCACTGGAGC
GGGAGGTCGAGCAGCTGACCCGCGACAAGGACCAGGCGGTGGCCGCGGAGGAATACGAGCGGGCCACCGAACTGCGCGAC
CGCATCGGCGAACTGAACGCCCGGATCGAGGCGGGCGACGGCACGGAACCGGACGACGGGCAGAGCCTGGAGGTCACCGC
CGAGGACATCGCCGAAGTGGTGTCCCGGCAGACCGGCATCCCGGTCAGCAGCCTCACCCAGGAGGAGAAGGACCGGCTGC
TCGGTCTGGAGGAACACCTGCGCCAGCGCGTCATCGGGCAGGACGAGGCCGTCGGCGCCGTCGCCGAGGCGGTGCTGCGC
TCCCGGACCGGCCTGGCCGACCCCGGCCGCCCGACCGGGAGCTTCCTCTTCCTCGGATCCACCGGTGTCGGCAAGACGGA
ACTCGCACGGGCCCTGGCCGAGGCGCTGTTCGGCAGCGAAGAGCTGATGGTGCGGCTCGACATGAGCGAGTACCAGGAGC
GCCACACCGTCAGCCGCCTGGTCGGCGCCCCGCCCGGGTACGTCGGCCACGAGGAGGCCGGACAGCTCACCGAGGCCGTG
CGCCGGCGGCCGTACTCGCTGCTGCTGCTGGACGAGGTCGAGAAGGCTCATCCCGATGTCTTCAACATCCTGCTCCAGGT
GCTGGACGACGGGCGTCTCACCGACGCCCAGGGCCGTACGGTCGACTTCCGCAACACCGTCGTCGTGATGACGAGCAACC
TCGGCTCCGAGGCCATCGGTGGCACCGCGCTCGGCTTCGGCGCCACGGATGCCGAGACCGGCGAGCAGGCCCGGCGCGAA
CGCGTCCTGCGCCCGCTGCGCGAGCACTTCCGCCCCGAATTCCTCAACCGCATCGACGAGATCGTCATCTTCCGGCAGCT
CGACGACGAGCAGCTGCGCCGGATCACCGACGTGATGCTGGAGGAGACCCGCCGTCGGCTGCACGCCCAGGACATCGCCG
TCGAGTTCGCCCCGGAGGCCATCGACTGGCTCGCGCGCCACGGCCACCAGCCCGAGTACGGGGCGCGGCCGCTGCGCCGC
ACCATCCAGCGGGAGGTCGACAACCGGCTGTCCCGGATGCTCCTCGACGGCGGCCTCGCCTCCGGCGAGCGGATCCGGGT
GGAGGTCGCGGACGACGGACAACTGGCCTTCCACACCGGCGCGGCCTCGAAGGCGCGGCAGCCCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpC | Bacillus subtilis subsp. subtilis str. 168 |
50 |
95.755 |
0.479 |
| clpC | Streptococcus pneumoniae TIGR4 |
42.738 |
99.057 |
0.423 |
| clpC | Streptococcus pneumoniae Rx1 |
42.738 |
99.057 |
0.423 |
| clpC | Streptococcus pneumoniae D39 |
42.738 |
99.057 |
0.423 |
| clpC | Lactococcus lactis subsp. lactis strain DGCC12653 |
44.085 |
94.693 |
0.417 |
| clpC | Streptococcus mutans UA159 |
43.101 |
96.58 |
0.416 |
| clpC | Streptococcus thermophilus LMD-9 |
44.706 |
90.212 |
0.403 |
| clpC | Streptococcus thermophilus LMG 18311 |
44.444 |
90.212 |
0.401 |
| clpC | Lactococcus lactis subsp. cremoris KW2 |
49.399 |
78.538 |
0.388 |
| clpE | Streptococcus mutans UA159 |
50.47 |
75.236 |
0.38 |
| clpE | Streptococcus pneumoniae TIGR4 |
49.128 |
74.41 |
0.366 |
| clpE | Streptococcus pneumoniae Rx1 |
49.128 |
74.41 |
0.366 |
| clpE | Streptococcus pneumoniae D39 |
49.128 |
74.41 |
0.366 |
| clpE | Streptococcus pneumoniae R6 |
49.128 |
74.41 |
0.366 |