Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   A7B19_RS17085 Genome accession   NZ_CP015726
Coordinates   4271493..4273700 (-) Length   735 a.a.
NCBI ID   WP_063732689.1    Uniprot ID   -
Organism   Streptomyces sp. RTd22     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4266493..4278700
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7B19_RS17070 - 4267115..4267336 (+) 222 WP_039938936.1 heavy-metal-associated domain-containing protein -
  A7B19_RS17075 - 4267333..4269620 (+) 2288 Protein_3563 heavy metal translocating P-type ATPase -
  A7B19_RS17080 - 4270015..4271319 (-) 1305 WP_199844216.1 citrate synthase -
  A7B19_RS17085 recD/recD2/recDB 4271493..4273700 (-) 2208 WP_063732689.1 ATP-dependent RecD-like DNA helicase Machinery gene
  A7B19_RS17090 - 4273912..4274927 (+) 1016 Protein_3566 LacI family DNA-binding transcriptional regulator -
  A7B19_RS17095 - 4275017..4276576 (+) 1560 WP_063732759.1 sugar ABC transporter ATP-binding protein -
  A7B19_RS17100 - 4276566..4278515 (+) 1950 WP_063732688.1 substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 735 a.a.        Molecular weight: 79126.45 Da        Isoelectric Point: 6.3941

>NTDB_id=154607 A7B19_RS17085 WP_063732689.1 4271493..4273700(-) (recD/recD2/recDB) [Streptomyces sp. RTd22]
MLKLAVVEGVLERITYANEENGYMVARVDTGRGSGDLLTVVGSLLGAQPGESLRMEGRWGSHPQYGKQFTVENYQTVLPA
TVQGIRRYLGSGLIKGIGPRIADRITEHFGIDTLDVIEEQPKRLIEVPGLGPKRTKMIAAAWEEQKAIKEVMVFLQGVGV
STSIAVRIYKKYGDASIAIVKNEPYRLAADVWGIGFLTADKIAQSVGIPHDSPDRVKAGLQYALSQSADQGHCYLPEEQL
IGDAVKLLQVDTGLVIDCLGELAAEDEGVVREPVPGPEGGEPVSAVYLVPFHRAEISLAGQVRRLLRTEEDRMPAFQGVD
WDAALGWLAKRTGADLAPEQSQAVRLALTEKVAVLTGGPGCGKSFTVRSVVELARAKKAKVVLAAPTGRAAKRLAELTGA
EASTVHRLLELKPGGDAAYDKDRPLDADLVVVDEASMLDLLLANKLAKAVPPGAHLLFVGDVDQLPSVGAGEVLRDLLAD
GSPVPAVRLTRIFRQAQQSGVVTNAHRINSGAPPITQGLSDFFLFVEDDTEEAGRLTVDVAARRVPAKFGLDPRRDVQVL
APMHRGPAGAGTLNGLLQQAITPARPDLPERRFGGRVFRVGDKVTQIRNNYEKGANGVFNGTVGVVTSLDSDEQRLTVLT
DEDEEVPYDFDELDELAHAYAVTIHRSQGSEYPAVVIPVTTGAWMMLQRNLLYTAVTRAKRLVVLVGSRRALGQAVRTVS
AGRRCTALDHRLGGT

Nucleotide


Download         Length: 2208 bp        

>NTDB_id=154607 A7B19_RS17085 WP_063732689.1 4271493..4273700(-) (recD/recD2/recDB) [Streptomyces sp. RTd22]
ATGCTCAAACTCGCGGTGGTCGAAGGGGTTCTGGAGCGGATCACCTACGCCAATGAGGAGAACGGGTACATGGTCGCCCG
GGTCGACACCGGCCGCGGCTCGGGTGATCTGCTGACCGTCGTCGGCTCGCTGCTGGGCGCGCAGCCGGGGGAGTCGCTGC
GGATGGAGGGCCGCTGGGGTTCCCATCCGCAATACGGCAAACAGTTCACCGTCGAGAACTACCAGACCGTCCTGCCCGCC
ACCGTCCAGGGCATCCGGCGCTATCTCGGCTCGGGCCTCATCAAGGGCATCGGCCCGCGCATCGCCGACCGGATCACCGA
GCACTTCGGCATCGACACCCTCGATGTCATCGAGGAGCAGCCGAAGCGGCTGATCGAGGTCCCCGGCCTCGGCCCCAAGC
GGACCAAGATGATCGCCGCGGCGTGGGAGGAGCAGAAGGCCATCAAGGAGGTGATGGTCTTCCTCCAGGGCGTCGGCGTC
TCCACCTCCATCGCGGTGCGGATCTACAAGAAGTACGGCGACGCGTCGATCGCGATAGTGAAGAACGAGCCGTATCGGCT
GGCCGCCGACGTCTGGGGCATCGGCTTCCTCACCGCCGACAAGATCGCCCAATCGGTCGGCATCCCGCACGACAGCCCCG
ACCGGGTCAAGGCCGGTTTGCAGTACGCGCTGTCCCAGTCCGCCGATCAGGGCCACTGCTATCTCCCCGAGGAGCAACTC
ATCGGCGATGCCGTGAAGTTGCTCCAGGTCGACACGGGCCTGGTCATCGACTGCCTGGGCGAGCTGGCCGCCGAGGACGA
GGGCGTGGTGCGCGAGCCGGTGCCGGGCCCGGAGGGCGGCGAACCGGTCTCGGCGGTCTATCTGGTGCCCTTCCACCGCG
CCGAGATCTCCCTCGCGGGGCAGGTGCGGCGGCTGCTGCGCACCGAGGAGGACCGGATGCCCGCCTTCCAGGGCGTGGAC
TGGGACGCGGCGCTGGGCTGGCTCGCCAAGCGCACCGGCGCCGATCTGGCCCCCGAGCAGAGCCAGGCGGTGCGGCTCGC
GCTCACCGAGAAGGTCGCGGTGCTCACCGGCGGCCCCGGCTGCGGCAAGTCGTTCACCGTGCGGTCCGTGGTGGAGCTGG
CCCGCGCCAAGAAGGCCAAGGTGGTGCTCGCGGCCCCCACCGGCCGGGCCGCCAAGCGGCTCGCCGAGCTGACCGGGGCC
GAGGCGTCCACGGTGCACCGGCTGCTGGAGCTGAAGCCCGGCGGGGACGCGGCGTACGACAAGGACCGTCCGCTGGACGC
CGACCTGGTGGTCGTCGACGAGGCCTCGATGCTCGATCTGCTGCTGGCCAACAAGCTGGCCAAGGCGGTCCCGCCGGGCG
CCCATCTGCTGTTCGTGGGGGATGTGGACCAGCTGCCGAGCGTCGGCGCCGGGGAGGTGCTGCGCGATCTGCTGGCCGAC
GGCAGCCCGGTGCCCGCCGTCCGGCTGACCCGGATCTTCCGCCAGGCGCAGCAGTCCGGGGTGGTCACCAACGCCCACCG
GATCAATTCCGGGGCCCCGCCGATCACGCAGGGGCTGTCGGACTTCTTCCTCTTCGTGGAGGACGACACGGAGGAGGCCG
GGCGGCTCACGGTGGATGTCGCGGCCCGTCGCGTGCCCGCGAAGTTCGGCCTCGACCCCCGCCGTGACGTGCAGGTCCTC
GCCCCGATGCACCGAGGCCCGGCGGGCGCGGGCACGCTCAACGGACTGTTGCAGCAGGCCATCACCCCGGCCCGGCCGGA
CCTCCCGGAGCGGCGTTTCGGCGGCCGGGTCTTCCGCGTCGGCGACAAGGTGACGCAGATCCGCAACAATTATGAGAAAG
GGGCCAACGGGGTCTTCAACGGCACGGTTGGAGTCGTCACCTCCCTCGACAGCGACGAGCAGCGGCTGACCGTGCTGACG
GACGAGGACGAGGAGGTGCCGTACGACTTCGACGAGCTGGATGAATTGGCTCACGCCTATGCGGTGACCATCCACCGCTC
CCAGGGCAGTGAGTACCCGGCCGTCGTGATCCCGGTGACCACCGGGGCCTGGATGATGTTGCAGCGGAACCTGCTGTACA
CGGCGGTGACCCGGGCCAAGCGCCTTGTGGTGCTGGTCGGCTCGCGCCGCGCGCTCGGGCAGGCGGTGCGTACCGTCTCG
GCGGGCAGACGCTGTACGGCGCTGGATCACCGGCTCGGCGGGACATAG

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(94-143)

AAA domain (AAA_30)

(336-514)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(658-706)

Helix-hairpin-helix containing domain (HHH_RecD2)

(144-234)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(573-638)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

34.686

100

0.361

Multiple sequence alignment