Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   AMD29_RS06835 Genome accession   NZ_CP012419
Coordinates   1309688..1311442 (-) Length   584 a.a.
NCBI ID   WP_000851080.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain SG-M1     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1304688..1316442
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AMD29_RS06810 (AMD29_06810) mvaD 1305117..1306061 (-) 945 WP_000348826.1 diphosphomevalonate decarboxylase -
  AMD29_RS06815 (AMD29_06815) mvk 1306043..1306921 (-) 879 WP_000659719.1 mevalonate kinase -
  AMD29_RS06820 (AMD29_06820) - 1307037..1308266 (-) 1230 WP_000489520.1 sensor histidine kinase -
  AMD29_RS06825 (AMD29_06825) - 1308266..1308952 (-) 687 WP_001264422.1 response regulator transcription factor -
  AMD29_RS06830 (AMD29_06830) - 1308954..1309580 (-) 627 WP_000449636.1 GTP pyrophosphokinase family protein -
  AMD29_RS06835 (AMD29_06835) rcrQ 1309688..1311442 (-) 1755 WP_000851080.1 ABC transporter ATP-binding protein Regulator
  AMD29_RS06840 (AMD29_06840) rcrP 1311432..1313249 (-) 1818 WP_000481818.1 ABC transporter ATP-binding protein Regulator
  AMD29_RS06845 (AMD29_06845) - 1313296..1313736 (-) 441 WP_000431168.1 MarR family winged helix-turn-helix transcriptional regulator -
  AMD29_RS06850 (AMD29_06850) - 1314005..1316077 (+) 2073 WP_000726914.1 surface-anchored 5'-nucleotidase -

Sequence

Protein


Download         Length: 584 a.a.        Molecular weight: 64507.85 Da        Isoelectric Point: 7.4058

>NTDB_id=154406 AMD29_RS06835 WP_000851080.1 1309688..1311442(-) (rcrQ) [Streptococcus agalactiae strain SG-M1]
MKTKSQKTSFFSNLSPYLKGYKLLFALAIVLATLSSLTTVIGPDRLKEMTDLMVKGLAGNIDLAKIGHIAGQLAVLYVLG
ALVSYLASFIVTTIIQKFAQGMRNAIADKINKIPLSYFDSHTQGDTLSRVTNDVDLMTQSFNQSLVTIVASTVLLIGSLI
MMFKTDWHLATTAIISVFSGFALSSIIMVKSQPLFKKQQMNLANISGYVEEIYSGHNIVTSHNARQQAKSDFQLLNDKLH
SSMWKSQFFSGIMMPLMQFIGNFGYVMVCVVGAMLAIKGTITMGTIVAFMTYVRIFTQPIGQIAQGITQLQSASAAMGRV
FEFLNETNMQEDKHKVLNLPKFKGYVSFEHVKFGYSDNKTIIHDFTSEAQPGQKVAIVGPTGAGKTTIVNLLMRFYDVNS
GSISIDDINIQDMKRSQVHDAFSMVLQDIWLFEGTIKENLIFNQTTISDDEVQEAAKAVGVHHFIMTLPKGYDTVLDDAV
TLSVGQKQLLTIARALLKNSPLLILDEATSSVDTRTEELIQKAMDKLMEGRTSFVIAHRLSTIKNADLILVMKDGNIIEQ
GSHDVLMSQSGFYADLYNSQFESA

Nucleotide


Download         Length: 1755 bp        

>NTDB_id=154406 AMD29_RS06835 WP_000851080.1 1309688..1311442(-) (rcrQ) [Streptococcus agalactiae strain SG-M1]
ATGAAAACTAAATCACAAAAAACGTCTTTTTTCTCTAATTTGTCTCCGTACCTCAAAGGTTACAAACTTCTTTTTGCGTT
AGCAATTGTGTTAGCAACTTTATCAAGCTTGACAACAGTTATAGGACCAGACCGTCTTAAAGAGATGACGGATCTTATGG
TAAAAGGCTTGGCTGGTAATATTGACTTAGCCAAAATCGGTCATATTGCAGGGCAATTGGCAGTATTATATGTTTTAGGT
GCATTAGTATCCTATCTAGCAAGTTTTATTGTAACGACTATTATTCAAAAATTTGCTCAAGGCATGCGCAATGCTATTGC
TGATAAAATCAATAAAATACCTTTGAGTTATTTTGATAGCCATACTCAAGGTGATACTTTATCTCGTGTTACAAATGATG
TGGATTTGATGACACAGTCTTTTAACCAAAGTTTAGTTACTATAGTTGCATCTACAGTATTATTGATTGGTTCATTAATT
ATGATGTTCAAAACAGATTGGCATTTAGCAACAACGGCGATTATATCGGTATTTTCAGGATTCGCTCTTTCTTCAATCAT
TATGGTGAAGAGTCAGCCTTTATTTAAAAAGCAACAGATGAATTTGGCTAATATATCTGGATATGTAGAAGAAATTTACT
CAGGACATAACATTGTTACTAGTCATAACGCAAGACAGCAGGCTAAGTCAGATTTTCAACTATTAAATGATAAACTTCAC
AGTTCCATGTGGAAATCACAATTTTTCTCTGGAATTATGATGCCTCTGATGCAGTTTATTGGTAATTTTGGTTATGTGAT
GGTGTGTGTGGTTGGTGCCATGTTAGCTATCAAAGGAACAATTACTATGGGTACAATTGTTGCTTTTATGACCTATGTTC
GTATTTTTACACAGCCTATTGGTCAGATTGCTCAAGGAATTACACAATTACAGTCTGCTAGTGCAGCCATGGGACGTGTT
TTTGAATTTTTAAATGAAACAAATATGCAAGAGGATAAGCACAAAGTGTTAAATCTTCCTAAGTTTAAGGGGTATGTGTC
CTTTGAACATGTCAAGTTTGGTTATAGTGATAACAAGACTATTATTCATGACTTTACTTCGGAGGCACAGCCTGGTCAGA
AAGTTGCTATTGTAGGACCAACTGGCGCAGGTAAAACGACAATTGTTAATTTATTGATGCGTTTTTATGATGTTAATTCA
GGTAGTATTTCCATAGATGACATCAATATCCAAGACATGAAACGTAGTCAAGTTCATGATGCTTTCTCGATGGTTCTTCA
AGATATATGGTTGTTTGAGGGAACTATTAAAGAAAATTTGATTTTTAATCAGACGACAATCAGTGACGATGAGGTTCAAG
AAGCTGCTAAGGCAGTCGGTGTACATCATTTTATAATGACACTACCTAAAGGGTATGATACTGTCCTTGATGACGCTGTG
ACATTGTCAGTTGGACAAAAGCAATTATTAACCATTGCTCGAGCTCTTTTGAAAAATTCTCCCTTACTTATCTTAGATGA
AGCAACTTCATCTGTTGATACACGTACAGAAGAGTTAATTCAAAAAGCTATGGACAAACTTATGGAAGGAAGAACATCAT
TTGTTATCGCACATCGTTTATCAACGATTAAAAACGCAGATTTGATTTTGGTCATGAAAGATGGGAATATCATTGAGCAA
GGCAGTCATGATGTTTTGATGTCTCAAAGTGGTTTTTATGCTGATCTGTATAATTCTCAATTCGAATCAGCTTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(26-299)

ABC transporter (ABC_tran)

(364-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

76.125

98.973

0.753

Multiple sequence alignment