Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   A6M16_RS05420 Genome accession   NZ_CP015557
Coordinates   1081985..1083754 (-) Length   589 a.a.
NCBI ID   WP_024395570.1    Uniprot ID   -
Organism   Streptococcus suis strain DN13     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1076985..1088754
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6M16_RS05400 (A6M16_05405) murB 1077607..1078515 (-) 909 WP_024395567.1 UDP-N-acetylmuramate dehydrogenase -
  A6M16_RS05405 (A6M16_05410) thrB 1078750..1079610 (-) 861 WP_011922331.1 homoserine kinase -
  A6M16_RS05410 (A6M16_05415) - 1079614..1080900 (-) 1287 WP_024395568.1 homoserine dehydrogenase -
  A6M16_RS05415 (A6M16_05420) - 1081005..1081928 (+) 924 WP_024395569.1 polysaccharide deacetylase family protein -
  A6M16_RS05420 (A6M16_05425) rcrQ 1081985..1083754 (-) 1770 WP_024395570.1 ABC transporter ATP-binding protein Regulator
  A6M16_RS05425 (A6M16_05430) rcrP 1083763..1085499 (-) 1737 WP_024395571.1 ABC transporter ATP-binding protein Regulator
  A6M16_RS05430 (A6M16_05435) - 1085575..1085817 (-) 243 WP_012028079.1 KH domain-containing protein -
  A6M16_RS05435 (A6M16_05440) rpsP 1085839..1086111 (-) 273 WP_002940682.1 30S ribosomal protein S16 -
  A6M16_RS05440 (A6M16_05445) - 1086236..1086544 (-) 309 WP_024390333.1 DUF4298 domain-containing protein -
  A6M16_RS05445 (A6M16_05450) pcp 1086544..1087191 (-) 648 WP_024390332.1 pyroglutamyl-peptidase I -
  A6M16_RS05450 (A6M16_05455) - 1087188..1087943 (-) 756 WP_024395572.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 589 a.a.        Molecular weight: 65774.73 Da        Isoelectric Point: 5.5749

>NTDB_id=154170 A6M16_RS05420 WP_024395570.1 1081985..1083754(-) (rcrQ) [Streptococcus suis strain DN13]
MKNRSVFTRVWDYLRRYQSSVFLAVFLKTISAVMNALEPFVLGLIITELTKNLLDIANGVEGAQINYSYIAIMLAIYALR
ALLYEIGAYGSNYFMTKAVQGATKELRQDLSHKINKIPVSYFDKHQYGDLLGRFTSDVETVSNALQQSFLQLVNAVLTLS
LAIFMCFWLDVSLALVVVTLVPVTYFGSKFVMGKSQPYFKQQADALGRLNGFVQENLTGFNVLKLYGREEISTEEFRQIT
ADLQEVGFKASFMSGLLMPLVHGFSNIAYVVVALLSGLKVLAGTLTVGNMQAFVQYVWQISQPVQTLTQLAPQLQSAKSS
LERIFSVLDELDEEDANALELTAGLTGQVSFEQVEFGYSEDKPLIRNFNLNVKPGEMVAIVGPTGAGKTTLINLLMRFYD
VTSGSIKVDGQDIRNLSRQSYRSQFGMVLQDAWLYEGTIKENLRFGRLDATDEEIVEAAKAANVDHFIRTLPGGYNMEMN
QESSNISQGQKQLLTIARALLADPAILILDEATSSVDTRLELLIQKAMKRLMKGRTSFVIAHRLSTIQEADKILVLKDGQ
IIEQGNHESLLADKGFYYNLYQSQFSESK

Nucleotide


Download         Length: 1770 bp        

>NTDB_id=154170 A6M16_RS05420 WP_024395570.1 1081985..1083754(-) (rcrQ) [Streptococcus suis strain DN13]
ATGAAGAATAGATCAGTATTTACCCGTGTTTGGGACTATTTGCGTCGTTACCAATCTTCTGTATTTTTAGCCGTTTTTCT
AAAGACCATTAGCGCAGTTATGAATGCCTTAGAACCCTTTGTACTGGGGCTTATCATTACAGAATTGACCAAGAATCTGT
TGGATATTGCTAATGGAGTAGAAGGAGCGCAGATTAACTATTCCTACATTGCCATCATGCTTGCCATCTATGCCCTTCGC
GCCCTTCTATATGAAATCGGTGCCTACGGTTCTAACTATTTTATGACCAAGGCAGTGCAGGGAGCAACTAAGGAACTACG
TCAGGATTTGAGCCACAAAATTAACAAGATTCCAGTATCTTATTTTGACAAGCACCAGTATGGTGATTTACTCGGGCGTT
TTACAAGCGATGTGGAGACTGTTTCAAACGCCCTGCAACAAAGTTTTCTCCAGCTAGTCAATGCCGTTCTGACCCTCTCT
CTAGCCATTTTCATGTGTTTCTGGTTGGATGTATCCCTAGCACTTGTAGTCGTAACCTTGGTTCCAGTGACCTATTTTGG
TTCTAAGTTTGTCATGGGCAAATCCCAACCATATTTCAAGCAACAGGCTGATGCCCTAGGTCGTTTGAACGGCTTTGTCC
AAGAAAATCTGACTGGTTTTAACGTTCTCAAACTTTACGGCCGTGAAGAAATTTCTACAGAAGAGTTTCGCCAGATTACC
GCAGATTTGCAGGAAGTTGGTTTCAAGGCTAGTTTCATGTCTGGTTTGCTCATGCCTCTAGTTCACGGCTTCTCAAATAT
CGCCTATGTTGTCGTCGCCCTGCTATCTGGATTGAAAGTTCTTGCAGGTACATTGACGGTGGGTAATATGCAGGCCTTCG
TCCAATACGTCTGGCAGATTTCTCAGCCAGTCCAAACCTTGACCCAATTGGCACCACAGTTGCAGTCTGCCAAATCTTCC
CTTGAACGCATCTTTTCAGTCTTAGATGAGCTTGACGAAGAAGACGCCAATGCGCTGGAGTTGACAGCTGGTTTGACCGG
ACAAGTCAGCTTTGAACAGGTTGAATTTGGCTATTCAGAAGATAAGCCGCTTATCCGTAACTTTAATCTTAATGTTAAGC
CAGGAGAAATGGTGGCTATCGTTGGACCAACGGGGGCAGGTAAGACTACTCTTATCAACTTGCTCATGCGTTTCTACGAT
GTGACATCAGGTTCTATCAAAGTGGATGGTCAGGACATTCGAAATCTTTCACGTCAATCCTACCGTAGTCAATTTGGTAT
GGTCTTGCAGGATGCTTGGCTCTATGAAGGGACCATCAAGGAAAACCTGCGTTTTGGACGTCTGGATGCGACGGATGAGG
AAATTGTGGAGGCTGCTAAAGCTGCTAACGTTGACCATTTTATCCGTACCCTGCCTGGTGGTTATAATATGGAAATGAAC
CAGGAATCCAGCAATATTTCCCAAGGACAAAAACAGCTTTTGACCATTGCGCGTGCCTTGTTGGCGGATCCTGCTATTCT
GATTCTTGACGAAGCGACTTCTTCAGTCGATACCCGTTTGGAACTATTGATTCAAAAAGCCATGAAACGGTTGATGAAAG
GGCGGACAAGTTTCGTCATCGCTCATCGCTTATCTACCATTCAGGAAGCTGATAAGATTTTGGTCTTGAAAGATGGACAG
ATTATCGAACAAGGTAACCATGAAAGTCTTTTGGCAGACAAAGGTTTCTATTATAATCTTTATCAAAGTCAGTTTAGTGA
ATCCAAATAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(21-304)

ABC transporter (ABC_tran)

(366-514)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

43.39

100

0.435