Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   A6M16_RS01130 Genome accession   NZ_CP015557
Coordinates   195831..198323 (-) Length   830 a.a.
NCBI ID   WP_024395975.1    Uniprot ID   -
Organism   Streptococcus suis strain DN13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 190831..203323
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6M16_RS01105 (A6M16_01105) dinB 191460..192527 (+) 1068 WP_014637367.1 DNA polymerase IV -
  A6M16_RS01110 (A6M16_01110) - 192570..192989 (+) 420 WP_024395976.1 Rrf2 family transcriptional regulator -
  A6M16_RS01115 (A6M16_01115) - 193228..193854 (+) 627 WP_014637369.1 NAD(P)-dependent oxidoreductase -
  A6M16_RS01120 (A6M16_01120) - 193959..194879 (+) 921 WP_014637370.1 1-phosphofructokinase family hexose kinase -
  A6M16_RS01125 (A6M16_01125) - 195018..195641 (-) 624 WP_229020546.1 hypothetical protein -
  A6M16_RS01130 (A6M16_01130) recD/recD2/recDB 195831..198323 (-) 2493 WP_024395975.1 ATP-dependent RecD-like DNA helicase Machinery gene
  A6M16_RS01135 (A6M16_01135) lepB 198694..199323 (-) 630 WP_024395179.1 signal peptidase I -
  A6M16_RS01140 (A6M16_01140) rnhC 199333..200223 (-) 891 WP_024395180.1 ribonuclease HIII -
  A6M16_RS01145 (A6M16_01145) - 200308..201291 (+) 984 WP_024395181.1 Gfo/Idh/MocA family protein -
  A6M16_RS01150 (A6M16_01150) - 201640..202878 (+) 1239 WP_024395182.1 LysM peptidoglycan-binding domain-containing protein -

Sequence

Protein


Download         Length: 830 a.a.        Molecular weight: 93284.68 Da        Isoelectric Point: 4.5487

>NTDB_id=154135 A6M16_RS01130 WP_024395975.1 195831..198323(-) (recD/recD2/recDB) [Streptococcus suis strain DN13]
MNEVYFTGTIDRIIFENPSNFYKILLLEIEETDADYDDYEIIVTGTIADVIEGEDYRFYGNLVTHPKYGQQLQISRYERS
KPTSAGLVKYFSSEHFKGIGRKTAEKIVELYGEDTIDKILAEPEKLTQITGLSSKNMQAFVEKLRLNYGTELILAKLAEY
GIPNKLAFQIQDQYKEKTLQIIEENPYQLVEDVQGLGFTIADRIAENLGIASDSPQRFRAGMLFSLIHRSMETGDTYVEA
RDLLEATLELLEKSRRTELAPAAVAKELTGLIADDKVQQEGTKIFDNSLYFAEHGIHKNLIRLMGKNGFKPFPRADVEAA
IAELETMSSLTYDDIQKEAIVQAITNPLFILTGGPGTGKTTVINGIIAVYAILHKIDLTRNREECPVLLAAPTGRAARRM
NELTGLPSATIHRHLGLVEGQEESYRDDYLEADFIIVDEFSMVDTWLANQLFQNISSQTQVLIVGDAEQLPSVSPGQVLA
DLLKIDKLPSITLERIYRQSDDSTIVTLASQIRQGALPSDFREKKADRSYFEAQNEQIPALIERIVGAAIKSGIPANEVQ
ILAPMYRGAAGIDQLNTMTQALLNPLEEGELEFLHNDQAFRQGDRVIHLVNDAEANVFNGDLGYITDLLPAKYTDSKQDE
ITINFDGSEVTYPRNEWYKITLAYAMSIHKSQGSEFQVVILPITRTSHRMLQRNLVYTAITRSKSKLILLGEISAFDYAV
KNAGTVRKTYLVPRFQEEMAEQDSKEALAEKAESKTATTTQTQPPTQPDRKEQVKVVKENNQQLSLLDQDQPEKTSPEPT
EYILTVDNLLTIDPMIGIEQADIEEFFNLK

Nucleotide


Download         Length: 2493 bp        

>NTDB_id=154135 A6M16_RS01130 WP_024395975.1 195831..198323(-) (recD/recD2/recDB) [Streptococcus suis strain DN13]
ATGAACGAAGTGTATTTTACCGGTACTATTGACCGGATTATTTTTGAAAATCCTAGTAATTTTTATAAAATCCTTCTCCT
TGAAATCGAGGAGACAGACGCAGACTATGATGACTACGAAATTATTGTGACCGGAACGATTGCCGATGTCATTGAAGGAG
AAGACTATCGTTTCTATGGCAATCTGGTCACCCATCCCAAGTATGGTCAGCAACTGCAAATTTCGCGTTACGAACGCAGC
AAGCCTACCTCAGCTGGTCTGGTCAAGTATTTCTCCAGCGAGCATTTCAAGGGAATTGGACGCAAAACAGCTGAAAAAAT
CGTTGAGCTCTATGGCGAAGATACCATTGATAAGATTTTAGCTGAACCTGAAAAACTAACCCAAATCACAGGCCTATCCA
GCAAGAACATGCAGGCATTTGTCGAAAAACTCCGCCTCAATTATGGAACCGAGTTAATCTTGGCAAAACTAGCCGAGTAT
GGCATTCCCAATAAATTGGCCTTTCAAATCCAAGACCAGTATAAGGAAAAAACACTTCAGATTATTGAAGAAAATCCCTA
TCAACTGGTCGAAGATGTCCAGGGGCTCGGCTTTACCATTGCCGATAGGATTGCGGAAAATCTGGGAATTGCCAGTGATT
CACCCCAACGCTTTCGGGCTGGTATGCTCTTTAGCCTCATTCATCGCTCCATGGAAACAGGCGATACCTATGTGGAGGCC
AGAGACTTGCTGGAAGCAACCCTTGAACTGCTGGAAAAATCCCGCCGTACAGAGCTGGCCCCCGCTGCTGTTGCCAAAGA
ATTGACGGGACTGATTGCAGACGACAAGGTACAGCAAGAAGGCACAAAGATTTTTGACAACAGCCTCTACTTTGCCGAAC
ATGGTATCCATAAAAACCTGATCCGCCTGATGGGAAAAAATGGTTTCAAACCCTTCCCACGCGCAGACGTTGAGGCTGCT
ATAGCAGAGCTGGAAACTATGTCTTCCCTGACCTACGATGACATTCAAAAAGAAGCCATCGTCCAAGCCATTACCAATCC
GCTTTTCATTCTGACAGGCGGACCAGGGACTGGTAAAACAACAGTTATCAACGGTATTATCGCGGTCTATGCCATCTTGC
ATAAGATTGATCTGACTCGCAACCGAGAAGAATGCCCAGTCCTCCTAGCCGCTCCAACTGGACGAGCAGCCAGACGGATG
AATGAATTGACAGGGCTGCCTTCTGCCACCATCCACCGCCATCTGGGGCTTGTTGAAGGACAGGAAGAATCCTACCGAGA
TGATTACCTCGAAGCCGACTTCATCATCGTGGATGAGTTTTCTATGGTCGACACTTGGTTGGCAAACCAGCTCTTCCAGA
ACATTTCCTCCCAAACCCAAGTTCTGATTGTCGGCGATGCGGAGCAATTACCTTCTGTCAGTCCCGGTCAGGTCCTTGCT
GACCTCCTGAAAATTGACAAGCTACCCAGCATCACTCTAGAACGTATCTATCGTCAATCCGATGATTCGACTATTGTTAC
CCTAGCCAGCCAGATTCGCCAAGGGGCTCTGCCTAGCGATTTCCGTGAGAAAAAGGCTGACCGCTCCTATTTTGAAGCGC
AAAACGAACAAATTCCAGCCCTGATTGAGCGCATTGTCGGCGCAGCCATCAAGTCGGGCATTCCTGCAAACGAAGTCCAA
ATCCTCGCTCCCATGTACCGTGGGGCCGCAGGCATTGACCAACTCAACACCATGACCCAGGCCCTCCTCAATCCACTGGA
AGAGGGAGAGTTAGAATTCCTCCACAACGATCAAGCCTTCCGCCAAGGTGACCGGGTCATTCATCTAGTCAACGACGCCG
AAGCCAATGTCTTCAATGGTGACTTAGGCTACATCACCGACCTCCTACCTGCCAAATATACGGATTCCAAACAGGATGAA
ATCACCATCAACTTCGACGGTAGCGAAGTCACCTATCCACGCAATGAATGGTACAAGATTACCCTGGCCTATGCCATGTC
CATCCACAAGTCCCAAGGCAGCGAGTTTCAGGTAGTCATCCTTCCCATCACGCGCACCAGCCACCGTATGCTCCAGCGCA
ATCTGGTCTACACCGCCATCACCCGCTCCAAGAGTAAGCTCATCCTCCTGGGCGAAATCTCCGCCTTCGACTACGCCGTC
AAAAACGCCGGAACCGTCCGAAAAACCTATCTGGTCCCACGTTTCCAAGAGGAAATGGCAGAGCAGGATAGCAAGGAAGC
TTTAGCTGAAAAAGCCGAAAGCAAAACAGCTACAACCACGCAAACCCAGCCCCCTACTCAGCCAGACAGAAAAGAACAGG
TTAAAGTAGTCAAAGAAAACAACCAACAACTCTCCCTTCTTGATCAAGACCAGCCAGAAAAAACAAGTCCCGAACCCACA
GAATACATTTTGACTGTAGATAACCTACTAACCATCGACCCCATGATTGGCATAGAACAGGCAGATATTGAAGAATTTTT
TAACCTTAAGTAA

Domains

Predicted by InterProScan.

AAA domain (AAA_30)

(332-529)

Helix-hairpin-helix containing domain (HHH_RecD2)

(148-237)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(575-645)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(663-710)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

41.744

91.205

0.381