Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   DE8669_RS05265 Genome accession   NZ_CP012391
Coordinates   1006996..1009038 (+) Length   680 a.a.
NCBI ID   WP_002224052.1    Uniprot ID   -
Organism   Neisseria meningitidis strain DE8669     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 1006996..1037327 1006996..1009038 within 0


Gene organization within MGE regions


Location: 1006996..1037327
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DE8669_RS05265 (DE8669_0994) recG 1006996..1009038 (+) 2043 WP_002224052.1 ATP-dependent DNA helicase RecG Machinery gene
  DE8669_RS13790 - 1009836..1009952 (+) 117 Protein_1013 IS5/IS1182 family transposase -
  DE8669_RS05270 (DE8669_0995) argC 1010102..1011145 (-) 1044 WP_002219775.1 N-acetyl-gamma-glutamyl-phosphate reductase -
  DE8669_RS05275 (DE8669_0996) - 1011142..1011423 (-) 282 WP_002219774.1 hypothetical protein -
  DE8669_RS05285 (DE8669_0997) - 1011791..1012945 (+) 1155 WP_002219773.1 cupin domain-containing protein -
  DE8669_RS14705 (DE8669_0998) - 1012954..1013160 (+) 207 WP_002244292.1 hypothetical protein -
  DE8669_RS12375 - 1013365..1013625 (+) 261 WP_002219771.1 hypothetical protein -
  DE8669_RS05300 - 1013785..1014411 (+) 627 WP_021438129.1 secretion protein HlyD -
  DE8669_RS15085 - 1014315..1014563 (+) 249 Protein_1020 MFP transporter -
  DE8669_RS05310 - 1014876..1015178 (+) 303 WP_002221436.1 hypothetical protein -
  DE8669_RS15240 - 1015462..1015614 (+) 153 Protein_1022 cysteine peptidase family C39 domain-containing protein -
  DE8669_RS05320 (DE8669_1004) hrpB 1015762..1017504 (+) 1743 WP_002239284.1 two-partner secretion system transporter HrpB -
  DE8669_RS14710 (DE8669_1005) - 1017613..1023202 (+) 5590 Protein_1024 DUF637 domain-containing protein -
  DE8669_RS05335 (DE8669_1007) - 1023221..1023484 (+) 264 WP_002234239.1 hypothetical protein -
  DE8669_RS15090 (DE8669_1008) - 1023591..1025876 (+) 2286 Protein_1026 DUF637 domain-containing protein -
  DE8669_RS05345 (DE8669_1009) - 1025892..1026323 (+) 432 WP_002214437.1 hypothetical protein -
  DE8669_RS05350 (DE8669_1010) - 1026468..1029131 (+) 2664 WP_014580961.1 DUF637 domain-containing protein -
  DE8669_RS05355 (DE8669_1011) - 1029138..1029647 (+) 510 WP_002219760.1 hypothetical protein -
  DE8669_RS05360 (DE8669_1012) - 1029716..1031395 (+) 1680 WP_002224017.1 DUF637 domain-containing protein -
  DE8669_RS05365 (DE8669_1013) - 1031404..1031781 (+) 378 WP_002217880.1 hypothetical protein -
  DE8669_RS05370 (DE8669_1014) - 1032059..1032433 (+) 375 WP_002224016.1 hypothetical protein -
  DE8669_RS05375 (DE8669_1015) - 1032519..1034273 (+) 1755 WP_228775721.1 DUF637 domain-containing protein -
  DE8669_RS05380 (DE8669_1016) - 1034276..1035211 (+) 936 WP_002246836.1 immunity 49 family protein -
  DE8669_RS05385 (DE8669_1017) - 1035810..1036298 (+) 489 WP_002233807.1 hypothetical protein -
  DE8669_RS05390 (DE8669_1018) - 1036362..1037327 (-) 966 WP_002217985.1 IS30-like element IS1655 family transposase -

Sequence

Protein


Download         Length: 680 a.a.        Molecular weight: 74998.11 Da        Isoelectric Point: 8.0869

>NTDB_id=154080 DE8669_RS05265 WP_002224052.1 1006996..1009038(+) (recG) [Neisseria meningitidis strain DE8669]
MMSPETQKQLKITDVSAKKLDKLNLHTAWDLVLHLPLRYEDETHIMPIKDAPIGVPCQVEGEVIHQEVTFKPRKQLIVQI
ADGSGSVLFLRFIHFYASHQKQTAVGKRIRAVGEIKHGFYGDEMIHPKIRDAEGGGLAESLTPVYPTVNGLNQPTLRRII
QTALDVTPLHDTLPDALLCRLKLPHLAESLRLLHSPPPSFTIHQLSDGTLPAWQRLKFDELLAQQLSMRLARQKRIGGTA
AALGGDGTLTQALRQALPFALTDAQEKVVSEICRDMAQTYPMHRLLQGDVGSGKTIVAALSALTAIESGAQVAVMAPTEI
LAEQHFIKFKQWLEPLGIEVVRLFGSLRKKAKDEAKAKLADGSVKIAIGTHALFSDGVTFHNLGLTIVDEQHRFGVAQRL
ALKNKGREVHQLMMSATPIPRTLAMSFFADLDVSVIDKLPPGRTPIKTRLVNNVRRAEVEGFVLNTCRKGRQAYWVCPLI
EESETLQLQTAAETLARLQTALPELNIGLVHGRMKAAEKAEVMARFSSGELNVLVATTVIEVGVDVPNAALMVIEHAERM
GLAQLHQLRGRVGRGAAESVCVLLFAEPLGELAKARLKVIYEHTDGFEIARQDLNIRGPGEFLGARQSGVPMLRFAKLEE
DLHLLEQAREIAPILIEQNPEIVEAHLARWLSGREGYLGV

Nucleotide


Download         Length: 2043 bp        

>NTDB_id=154080 DE8669_RS05265 WP_002224052.1 1006996..1009038(+) (recG) [Neisseria meningitidis strain DE8669]
ATGATGTCGCCCGAAACCCAGAAACAGCTCAAAATCACCGATGTTTCCGCCAAGAAGCTCGACAAACTCAACCTCCATAC
CGCGTGGGATTTGGTGTTGCACCTGCCGCTGCGTTACGAGGACGAGACGCACATTATGCCGATTAAGGACGCGCCGATTG
GCGTGCCGTGCCAGGTCGAGGGCGAGGTTATCCATCAGGAAGTAACGTTCAAACCGCGCAAGCAGTTGATTGTCCAAATC
GCCGACGGTTCCGGCAGCGTCCTTTTTCTGCGCTTCATCCACTTTTACGCCAGCCATCAGAAACAGACGGCGGTCGGCAA
ACGCATCCGCGCCGTGGGCGAAATCAAACACGGCTTTTACGGCGACGAGATGATTCATCCCAAAATCCGCGATGCCGAGG
GCGGCGGTTTGGCGGAAAGCCTCACGCCGGTTTACCCGACCGTAAACGGTTTGAACCAGCCCACTTTGCGCCGTATTATT
CAGACGGCGTTGGACGTTACGCCGCTGCACGACACGCTGCCCGATGCCCTGCTGTGCCGTCTGAAGCTGCCACACCTCGC
CGAAAGCCTGCGTCTTTTGCATTCGCCGCCGCCGAGTTTCACGATTCATCAGCTTTCAGACGGCACGCTGCCTGCATGGC
AACGGCTCAAATTCGATGAACTTTTGGCGCAACAGCTTTCGATGCGCTTGGCGCGACAGAAGCGTATCGGCGGCACGGCG
GCGGCATTGGGCGGCGACGGCACATTGACCCAAGCCCTGCGCCAAGCCCTGCCGTTTGCCCTGACCGATGCGCAAGAAAA
AGTTGTTTCCGAAATCTGCCGCGATATGGCGCAAACCTACCCGATGCACCGCCTGCTGCAGGGCGATGTCGGCAGCGGCA
AAACCATTGTCGCCGCCTTGTCCGCGCTGACCGCCATCGAATCCGGTGCGCAGGTGGCTGTAATGGCGCCCACTGAAATC
CTTGCCGAACAACATTTTATTAAATTTAAACAATGGCTCGAACCTTTGGGCATTGAAGTTGTCCGCCTTTTTGGCAGTTT
GCGTAAAAAAGCCAAAGACGAAGCCAAAGCCAAACTCGCCGACGGCAGCGTCAAAATCGCCATCGGCACGCACGCCCTGT
TTTCAGACGGCGTGACGTTTCACAATTTGGGCCTGACCATCGTGGACGAACAGCACCGTTTCGGCGTTGCCCAACGCCTC
GCCCTTAAAAACAAAGGGCGCGAAGTCCATCAGTTGATGATGTCCGCCACGCCCATCCCGCGCACGCTTGCGATGAGTTT
TTTCGCCGATTTGGACGTGTCCGTCATCGACAAACTGCCGCCCGGGCGCACCCCGATTAAAACGCGCCTCGTCAACAACG
TCCGCCGCGCCGAAGTCGAAGGCTTCGTCCTCAATACTTGCCGAAAAGGGCGGCAGGCGTATTGGGTCTGCCCATTGATT
GAAGAAAGCGAAACCCTGCAACTGCAAACCGCCGCCGAAACCCTCGCCCGGCTTCAGACGGCATTGCCCGAGCTGAATAT
CGGACTGGTACACGGGCGCATGAAGGCCGCCGAAAAGGCCGAAGTGATGGCACGGTTTTCTTCGGGGGAGCTGAACGTCT
TGGTCGCCACCACCGTTATCGAAGTCGGCGTAGATGTGCCCAATGCCGCCCTGATGGTCATCGAACACGCCGAGCGCATG
GGCTTGGCGCAGCTGCACCAATTACGCGGTCGGGTCGGGCGCGGCGCGGCAGAAAGCGTGTGCGTCCTCCTGTTTGCCGA
ACCCTTGGGCGAACTCGCCAAAGCGCGGCTGAAAGTCATCTACGAACACACCGACGGCTTTGAAATCGCCCGCCAAGACC
TCAACATCCGCGGCCCCGGCGAATTTCTCGGCGCGCGTCAAAGCGGCGTGCCTATGCTGCGTTTCGCCAAGCTCGAAGAA
GACTTACACCTTTTGGAACAAGCGCGCGAAATCGCCCCGATACTGATTGAACAAAACCCCGAAATCGTCGAAGCGCATTT
GGCACGATGGCTTTCCGGCAGGGAAGGTTATTTGGGCGTGTGA

Domains

Predicted by InterproScan.

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(604-666)

Helicase conserved C-terminal domain (Helicase_C)

(468-575)

RecG wedge domain (RecG_wedge)

(15-164)

DEAD/DEAH box helicase (DEAD)

(262-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

98.824

100

0.988

Multiple sequence alignment