Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   A4W82_RS06040 Genome accession   NZ_CP015487
Coordinates   1175524..1177287 (-) Length   587 a.a.
NCBI ID   WP_016265229.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain TMW 1.46     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1170524..1182287
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4W82_RS06020 (A4W82_05935) - 1171317..1172294 (-) 978 WP_016265226.1 alpha-ketoacid dehydrogenase subunit beta -
  A4W82_RS06025 (A4W82_05940) pdhA 1172296..1173405 (-) 1110 WP_016265227.1 pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha -
  A4W82_RS06030 (A4W82_05945) - 1173729..1174412 (-) 684 WP_025015724.1 hypothetical protein -
  A4W82_RS06035 (A4W82_05950) def 1174918..1175475 (+) 558 WP_011374787.1 peptide deformylase -
  A4W82_RS06040 (A4W82_05955) rcrQ 1175524..1177287 (-) 1764 WP_016265229.1 ABC transporter ATP-binding protein Regulator
  A4W82_RS06045 (A4W82_05960) rcrP 1177274..1179013 (-) 1740 WP_016265230.1 ABC transporter ATP-binding protein Regulator
  A4W82_RS06050 (A4W82_05965) - 1179041..1179526 (-) 486 WP_016265231.1 hypothetical protein -
  A4W82_RS06055 (A4W82_05970) - 1179723..1179935 (+) 213 WP_011374791.1 DNA-directed RNA polymerase subunit epsilon -
  A4W82_RS06060 (A4W82_05975) - 1179940..1181628 (+) 1689 WP_016265232.1 ribonuclease J -

Sequence

Protein


Download         Length: 587 a.a.        Molecular weight: 65070.62 Da        Isoelectric Point: 6.2489

>NTDB_id=153955 A4W82_RS06040 WP_016265229.1 1175524..1177287(-) (rcrQ) [Latilactobacillus sakei strain TMW 1.46]
MKNIKVLKRLMRYIGPYKITFWSAITATVISVLANALWPFIMGLAVTEISQNLAQHVAVNFSYITKVIAMILSFALLYQT
MMFLGSFLMTRAVQHAMRDLRRDINLQMNALPVRFFDSQQQGNILSRVTNDVDAITNALQQSLIQVVTSILGIIMAVIMM
LTINLWMALLSLIMIPASLLISKAIIKKSQVYFQGQQNTLGEMNGYVQENYGGFSVLKLYGQEDRAVDEFAAITDRLTEF
GFKAAFISGIMMPLVGLTTNLTYAGMATLGGYYVLHGVITVGNLQAFIQYIWQINQPISQITQLSGVMQAAAAATQRVFE
ILDEPIEPTDQETAELPADVQGKVEFKDVSFSYDPAKPLIRDLSFTANPGDKIAIVGPTGAGKTTMINLLMRFYDVSSGQ
ILIDGVDTRQLSKQTVRSLFGMVLQDAWLYHTTITENIRFGKLDATEYEVVDAAKTANVDHFIHTLPNGYQMAIDEEADN
VSLGQKQLLTIARAVIANPKILILDEATSSVDTRLESLLQKAMEKVMQGRTSFVIAHRLSTIRDANLILVMDHGQIVEKG
THDDLLAANGVYAKLYNSQFAETKLNA

Nucleotide


Download         Length: 1764 bp        

>NTDB_id=153955 A4W82_RS06040 WP_016265229.1 1175524..1177287(-) (rcrQ) [Latilactobacillus sakei strain TMW 1.46]
ATGAAGAATATTAAGGTGCTCAAACGCCTGATGCGCTATATTGGGCCTTATAAAATAACGTTCTGGTCAGCAATTACCGC
AACGGTGATTTCCGTTTTAGCGAATGCGTTGTGGCCATTTATCATGGGACTAGCAGTGACTGAAATTAGTCAAAACTTAG
CGCAACACGTCGCCGTTAACTTTAGTTACATTACTAAAGTCATCGCGATGATTCTCAGCTTTGCGTTACTTTATCAAACA
ATGATGTTTTTGGGATCGTTTTTAATGACGCGTGCAGTGCAACACGCAATGCGTGATTTACGGCGGGATATCAATCTACA
GATGAACGCTTTGCCAGTCCGTTTCTTTGATTCACAACAACAAGGTAATATCTTGTCGCGAGTTACCAATGATGTCGATG
CAATCACGAATGCCTTGCAACAGAGTTTAATTCAAGTTGTGACCTCAATTTTGGGAATCATTATGGCGGTTATCATGATG
TTGACGATTAATTTATGGATGGCTTTACTATCTTTAATTATGATTCCGGCCTCACTTTTGATTTCCAAAGCAATCATCAA
AAAGTCACAGGTTTACTTCCAGGGGCAACAAAATACCTTGGGTGAAATGAATGGTTATGTTCAGGAAAACTACGGTGGCT
TCAGTGTCTTGAAGTTGTATGGTCAAGAAGACAGAGCGGTTGATGAATTTGCAGCGATTACCGATCGATTGACTGAATTT
GGCTTCAAAGCGGCCTTTATTTCAGGAATCATGATGCCGTTAGTGGGTCTAACCACTAATCTAACCTATGCTGGGATGGC
AACCTTGGGTGGTTACTATGTCTTGCACGGGGTCATTACGGTTGGTAATTTACAGGCCTTTATTCAATATATTTGGCAGA
TTAATCAACCAATTTCGCAAATTACGCAGTTATCTGGTGTCATGCAAGCGGCTGCCGCTGCGACACAACGGGTTTTTGAA
ATCTTGGATGAACCTATTGAACCCACTGATCAAGAAACAGCTGAATTACCGGCTGACGTTCAGGGAAAAGTTGAATTTAA
AGATGTCAGCTTTAGCTATGATCCAGCCAAACCATTGATTCGGGATCTAAGTTTCACCGCCAATCCGGGTGATAAAATTG
CGATTGTTGGGCCAACCGGTGCTGGGAAGACGACCATGATTAATTTATTGATGCGTTTTTACGATGTTAGTTCTGGTCAA
ATCCTAATTGATGGCGTCGATACACGCCAGTTGAGTAAACAAACAGTTCGCTCACTCTTTGGGATGGTTCTTCAGGATGC
TTGGTTGTATCACACAACGATTACGGAAAATATTCGCTTTGGGAAGCTAGATGCTACCGAATATGAAGTCGTGGATGCTG
CCAAAACGGCCAATGTTGATCACTTCATCCATACGTTGCCAAATGGTTATCAGATGGCAATTGATGAAGAAGCGGATAAC
GTGTCGTTAGGGCAAAAGCAACTCCTAACAATTGCCCGGGCGGTCATTGCTAACCCTAAAATTTTGATTTTAGATGAAGC
AACCAGTTCGGTCGATACGCGCTTAGAAAGCTTATTGCAAAAGGCGATGGAAAAAGTGATGCAGGGTCGAACCAGTTTTG
TGATTGCCCATCGCTTATCAACAATTCGGGATGCTAACTTAATTTTAGTAATGGATCACGGTCAAATTGTTGAAAAGGGA
ACACATGACGACTTATTAGCTGCTAATGGTGTTTACGCTAAGCTTTATAACAGTCAATTTGCAGAAACAAAATTAAATGC
ATAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(361-509)

ABC transporter transmembrane region (ABC_membrane)

(24-297)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

42.906

99.659

0.428