Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   A6R75_RS06805 Genome accession   NZ_CP015377
Coordinates   1453725..1454249 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain BAMCPA07-48     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1448725..1459249
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6R75_RS06790 (A6R75_06790) aroB 1449841..1450947 (-) 1107 WP_003107839.1 3-dehydroquinate synthase -
  A6R75_RS06795 (A6R75_06795) aroK 1450997..1451515 (-) 519 WP_003095833.1 shikimate kinase AroK -
  A6R75_RS06800 (A6R75_06800) pilQ 1451527..1453671 (-) 2145 WP_003095835.1 type 4a pilus secretin PilQ Machinery gene
  A6R75_RS06805 (A6R75_06805) comL/pilP 1453725..1454249 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  A6R75_RS06810 (A6R75_06810) pilO 1454246..1454869 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  A6R75_RS06815 (A6R75_06815) pilN 1454866..1455462 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  A6R75_RS06820 (A6R75_06820) pilM 1455462..1456526 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  A6R75_RS06825 (A6R75_06825) - 1456711..1459182 (+) 2472 WP_023092706.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=153736 A6R75_RS06805 WP_003095836.1 1453725..1454249(-) (comL/pilP) [Pseudomonas aeruginosa strain BAMCPA07-48]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=153736 A6R75_RS06805 WP_003095836.1 1453725..1454249(-) (comL/pilP) [Pseudomonas aeruginosa strain BAMCPA07-48]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGACCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGATGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362