Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   AS891_RS17865 Genome accession   NZ_CP015375
Coordinates   3384396..3385313 (-) Length   305 a.a.
NCBI ID   WP_003232954.1    Uniprot ID   A0A9W5LHY5
Organism   Bacillus subtilis subsp. subtilis strain KCTC 3135     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 3379396..3390313
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AS891_RS17840 (AS891_17835) spx 3379754..3380149 (-) 396 WP_003245483.1 transcriptional regulator Spx -
  AS891_RS17845 (AS891_17840) yjbC 3380330..3380908 (-) 579 WP_003244921.1 GNAT family N-acetyltransferase -
  AS891_RS17850 (AS891_17845) yjbB 3381072..3382289 (-) 1218 WP_010886478.1 MFS transporter -
  AS891_RS17855 (AS891_17850) oppF 3382396..3383313 (-) 918 WP_003245567.1 oligopeptide ABC transporter ATP-binding protein OppF -
  AS891_RS17860 (AS891_17855) oppD 3383315..3384391 (-) 1077 WP_014906294.1 oligopeptide ABC transporter ATP-binding protein OppD -
  AS891_RS17865 (AS891_17860) amiD 3384396..3385313 (-) 918 WP_003232954.1 oligopeptide ABC transporter permease OppC Regulator
  AS891_RS17870 (AS891_17865) oppB 3385317..3386252 (-) 936 WP_003245554.1 oligopeptide ABC transporter permease OppB -
  AS891_RS17875 (AS891_17870) oppA 3386360..3387996 (-) 1637 Protein_3489 oligopeptide ABC transporter substrate-binding protein OppA -
  AS891_RS17880 (AS891_17875) trpS 3388740..3389732 (+) 993 WP_003245134.1 tryptophan--tRNA ligase -

Sequence

Protein


Download         Length: 305 a.a.        Molecular weight: 33621.12 Da        Isoelectric Point: 10.2873

>NTDB_id=153676 AS891_RS17865 WP_003232954.1 3384396..3385313(-) (amiD) [Bacillus subtilis subsp. subtilis strain KCTC 3135]
MQNIPKNMFEPAAANAGDAEKISKKSLSLWKDAMLRFRSNKLAMVGLIIIVLIILMAIFAPMFSRYDYSTTNLLNADKPP
SKDHWFGTDDLGRDIFVRTWVGARISIFIGVAAAVLDLLIGVIWGSISGFRGGRTDEIMMRIADILWAVPSLLMVILLMV
VLPKGLFTIIIAMTITGWINMARIVRGQVLQLKNQEYVLASQTLGAKTSRLLFKHIVPNAMGSILVTMTLTVPTAIFTEA
FLSYLGLGVPAPLASWGTMASDGLPALTYYPWRLFFPAGFICITMFGFNVVGDGLRDALDPKLRK

Nucleotide


Download         Length: 918 bp        

>NTDB_id=153676 AS891_RS17865 WP_003232954.1 3384396..3385313(-) (amiD) [Bacillus subtilis subsp. subtilis strain KCTC 3135]
ATGCAGAACATTCCAAAAAACATGTTTGAACCAGCCGCAGCGAATGCCGGCGATGCAGAAAAAATAAGTAAAAAGAGCCT
TTCCCTCTGGAAAGATGCGATGCTTCGCTTCCGCAGCAATAAGCTTGCAATGGTCGGGCTTATCATTATCGTACTTATTA
TCCTTATGGCAATTTTTGCGCCGATGTTCTCAAGGTATGATTATTCAACTACTAATCTCTTAAATGCGGATAAGCCGCCT
TCAAAAGATCACTGGTTCGGAACAGATGATCTTGGACGGGACATTTTCGTCCGTACATGGGTAGGGGCGCGAATCTCAAT
CTTTATCGGTGTTGCAGCTGCTGTTCTCGATTTGCTGATCGGCGTCATTTGGGGGAGCATTTCAGGCTTCCGCGGAGGAA
GAACAGATGAAATCATGATGCGTATCGCTGATATCCTTTGGGCAGTTCCTTCATTATTAATGGTTATCTTACTGATGGTT
GTTCTTCCGAAAGGTCTATTTACGATTATTATTGCCATGACGATTACAGGCTGGATTAATATGGCCAGAATCGTGCGCGG
ACAAGTGCTGCAGCTGAAGAATCAGGAGTATGTGCTTGCTTCACAGACACTGGGTGCAAAAACATCCCGTCTTCTATTTA
AACATATCGTGCCAAACGCAATGGGTTCTATTTTGGTCACGATGACACTGACAGTTCCTACTGCGATTTTTACAGAAGCC
TTTTTAAGCTATTTGGGACTTGGTGTTCCGGCTCCGCTGGCAAGCTGGGGAACGATGGCTTCTGACGGATTGCCTGCATT
GACCTATTATCCGTGGCGTTTATTCTTCCCTGCCGGATTTATCTGCATTACAATGTTTGGTTTTAACGTTGTCGGCGACG
GATTAAGAGACGCATTGGATCCTAAGTTACGTAAATAA

Domains

Predicted by InterProScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(121-305)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9W5LHY5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus thermophilus LMG 18311

35.922

100

0.364
  amiD Streptococcus thermophilus LMD-9

35.922

100

0.364