Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   AS891_RS15925 Genome accession   NZ_CP015375
Coordinates   3038974..3039423 (-) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis subsp. subtilis strain KCTC 3135     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 3033974..3044423
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AS891_RS15895 (AS891_15890) sepM 3034053..3035078 (-) 1026 WP_003245451.1 protease DdcP Regulator
  AS891_RS15900 (AS891_15895) ylbK 3035080..3035862 (-) 783 WP_003232221.1 patatin family protein -
  AS891_RS15905 (AS891_15900) spoVV 3036043..3037269 (+) 1227 WP_003245492.1 dipicolinic acid transporter SpoVV -
  AS891_RS15910 (AS891_15905) coaD 3037280..3037765 (-) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  AS891_RS15915 (AS891_15910) rsmD 3037770..3038324 (-) 555 WP_003232227.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  AS891_RS15920 (AS891_15915) ylbG 3038647..3038919 (-) 273 WP_009967171.1 YlbG family protein -
  AS891_RS15925 (AS891_15920) ylbF 3038974..3039423 (-) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  AS891_RS15930 (AS891_15925) ylbE 3039539..3039778 (-) 240 WP_003232231.1 YlbE-like family protein -
  AS891_RS15935 (AS891_15930) ylbD 3039794..3040192 (-) 399 WP_003232233.1 YlbD family protein -
  AS891_RS15940 (AS891_15935) ylbC 3040424..3041464 (-) 1041 WP_003245434.1 CAP domain-containing protein -
  AS891_RS15945 (AS891_15940) ylbB 3041548..3041994 (-) 447 WP_003221362.1 CBS domain-containing protein -
  AS891_RS15950 (AS891_15945) ylbA 3042134..3042496 (+) 363 WP_003232238.1 YugN family protein -
  AS891_RS15955 (AS891_15950) ctaG 3042528..3043421 (-) 894 WP_003244967.1 cytochrome c oxidase assembly factor CtaG -
  AS891_RS15960 (AS891_15955) ctaF 3043448..3043780 (-) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  AS891_RS15965 (AS891_15960) ctaE 3043783..3044406 (-) 624 WP_003232244.1 cytochrome c oxidase subunit III -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=153660 AS891_RS15925 WP_003221370.1 3038974..3039423(-) (ylbF) [Bacillus subtilis subsp. subtilis strain KCTC 3135]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=153660 AS891_RS15925 WP_003221370.1 3038974..3039423(-) (ylbF) [Bacillus subtilis subsp. subtilis strain KCTC 3135]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGATAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1