Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   A6E92_RS28135 Genome accession   NZ_CP015362
Coordinates   6554173..6555543 (+) Length   456 a.a.
NCBI ID   WP_084996371.1    Uniprot ID   A0ABY2PB54
Organism   Streptomyces sp. S8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6549173..6560543
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6E92_RS28115 (A6E92_27640) - 6550143..6550934 (-) 792 WP_084996369.1 peptidylprolyl isomerase -
  A6E92_RS28120 (A6E92_27645) - 6551103..6551792 (+) 690 WP_084996370.1 MBL fold metallo-hydrolase -
  A6E92_RS28125 (A6E92_27650) hisS 6551810..6553072 (+) 1263 WP_028420086.1 histidine--tRNA ligase -
  A6E92_RS28130 (A6E92_27655) - 6553450..6554088 (+) 639 WP_028420087.1 vitamin K epoxide reductase family protein -
  A6E92_RS28135 (A6E92_27660) rarA 6554173..6555543 (+) 1371 WP_084996371.1 replication-associated recombination protein A Machinery gene
  A6E92_RS28140 (A6E92_27665) - 6555620..6556321 (-) 702 WP_084996372.1 DUF2470 domain-containing protein -
  A6E92_RS28145 (A6E92_27670) rpsD 6556513..6557127 (+) 615 WP_006123201.1 30S ribosomal protein S4 -
  A6E92_RS28150 (A6E92_27675) - 6557145..6559446 (-) 2302 Protein_5562 AAA family ATPase -
  A6E92_RS28155 (A6E92_27680) - 6559643..6560098 (+) 456 WP_084996373.1 DUF948 domain-containing protein -
  A6E92_RS28160 (A6E92_27685) - 6560106..6560456 (+) 351 WP_018490309.1 DUF6167 family protein -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 48567.97 Da        Isoelectric Point: 6.3805

>NTDB_id=153477 A6E92_RS28135 WP_084996371.1 6554173..6555543(+) (rarA) [Streptomyces sp. S8]
MEPDLFTAAAEDRQEKDPSASPLAVRMRPRALDEVVGQQHLLKPGSPLRRLVEGSGGPAGASSVILWGPPGTGKTTLAYV
VSKATNKRFVELSAITAGVKEVRAVIESARRASGGFGKETVLFLDEIHRFSKAQQDSLLPAVENRWVTLIAATTENPYFS
VISPLLSRSLLLTLEPLTDDDLRDLVRRALTDERGLGGALTLPEDAEAHLLRIAGGDARRVLTALEAAAGAALATHEAEI
TLETVEATVDRAAVKYDRDGDQHYDVASALIKSIRGSDVDAALHYLARMIEAGEDPRFIARRLMISASEDIGLADPTALP
TAVAAAQAVAMIGFPEAALTLSHATIALALAPKSNAATLAIFAAQEDVRKGLAGPVPAHLRDGHYKGAAKLGHAQGYVYP
HDVQGGIAAQQYAPDAVRDRRYYTPTRHGAEARYAEVVERVRERLGRQGGGPDTSS

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=153477 A6E92_RS28135 WP_084996371.1 6554173..6555543(+) (rarA) [Streptomyces sp. S8]
GTGGAGCCCGACCTCTTTACCGCAGCCGCCGAAGACCGCCAGGAGAAGGACCCGTCCGCCAGCCCCCTCGCGGTCCGGAT
GCGCCCCCGTGCCCTGGACGAGGTCGTCGGCCAGCAGCATCTGCTCAAGCCGGGCTCGCCGCTCCGCCGACTCGTCGAGG
GGAGCGGCGGTCCGGCCGGAGCCTCCTCGGTGATCCTGTGGGGCCCGCCCGGCACCGGGAAGACGACTCTCGCGTACGTG
GTCAGCAAGGCCACCAACAAGCGCTTCGTCGAGCTGTCCGCGATCACGGCGGGTGTCAAGGAGGTCCGGGCCGTCATCGA
GAGCGCGCGCCGCGCCTCCGGCGGCTTCGGCAAGGAGACCGTCCTCTTCCTGGACGAGATCCACCGCTTCTCCAAGGCCC
AGCAGGACTCCCTGCTCCCCGCCGTGGAGAACCGCTGGGTGACCCTGATCGCGGCCACCACGGAGAATCCGTACTTCTCC
GTGATCTCGCCGCTGCTCTCACGCTCCCTGCTGCTCACCCTGGAGCCGCTGACCGACGACGACCTGCGCGATCTGGTGCG
CCGGGCGCTGACCGACGAGCGCGGCCTCGGCGGGGCGCTCACGCTGCCCGAGGACGCGGAGGCGCATCTGCTGCGCATCG
CGGGCGGTGACGCGCGCCGGGTGCTCACGGCTCTGGAGGCGGCGGCCGGTGCGGCGCTCGCCACGCACGAGGCGGAGATC
ACGCTGGAGACGGTCGAGGCCACCGTCGACCGGGCCGCCGTGAAGTACGACCGGGACGGCGACCAGCACTACGACGTGGC
CAGCGCGCTCATCAAGTCCATCCGCGGCTCCGACGTGGACGCTGCCCTGCACTATCTGGCCCGGATGATCGAGGCGGGGG
AGGACCCCCGGTTCATCGCCCGGCGGCTGATGATCTCGGCCAGCGAGGACATCGGGCTCGCGGACCCCACCGCGCTGCCG
ACAGCGGTGGCGGCCGCCCAGGCCGTCGCCATGATCGGCTTCCCGGAGGCGGCGCTCACCCTGAGCCACGCCACGATCGC
CCTCGCCCTCGCGCCGAAGTCCAACGCGGCGACGCTCGCGATCTTCGCCGCGCAGGAGGACGTGCGGAAGGGGCTCGCCG
GCCCCGTCCCGGCCCATCTGCGCGACGGGCACTACAAGGGCGCCGCCAAGCTCGGCCACGCCCAGGGCTATGTCTATCCG
CATGACGTCCAGGGCGGTATCGCCGCCCAGCAGTACGCCCCGGACGCGGTCCGCGACCGGCGGTACTACACCCCCACCCG
GCACGGCGCCGAGGCGAGGTACGCGGAGGTGGTCGAGCGGGTCCGCGAGCGCCTGGGCCGTCAGGGCGGCGGCCCGGACA
CGTCGTCCTGA

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(64-168)

AAA C-terminal domain (AAA_assoc_2)

(199-275)

MgsA AAA+ ATPase C terminal (MgsA_C)

(276-441)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

43.981

94.737

0.417