Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   CDIF28670_RS12115 Genome accession   NZ_CP012312
Coordinates   2470845..2472677 (-) Length   610 a.a.
NCBI ID   WP_003430476.1    Uniprot ID   -
Organism   Clostridioides difficile strain DSM 28670     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2465845..2477677
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDIF28670_RS12095 (CDIF28670_02409) - 2465859..2467223 (-) 1365 WP_118712592.1 aldehyde dehydrogenase -
  CDIF28670_RS12100 (CDIF28670_02410) - 2467539..2468063 (-) 525 WP_003430479.1 flavodoxin domain-containing protein -
  CDIF28670_RS12105 (CDIF28670_02411) - 2468112..2468609 (-) 498 WP_070113368.1 MarR family winged helix-turn-helix transcriptional regulator -
  CDIF28670_RS12110 (CDIF28670_02412) hflX 2468851..2470122 (-) 1272 WP_330426765.1 GTPase HflX -
  CDIF28670_RS12115 (CDIF28670_02413) rcrQ 2470845..2472677 (-) 1833 WP_003430476.1 ABC transporter ATP-binding protein Regulator
  CDIF28670_RS12120 (CDIF28670_02414) - 2472670..2474916 (-) 2247 WP_070117646.1 ABC transporter ATP-binding protein -
  CDIF28670_RS12125 (CDIF28670_02415) - 2474984..2475445 (-) 462 WP_114108027.1 MarR family winged helix-turn-helix transcriptional regulator -
  CDIF28670_RS12135 (CDIF28670_02416) - 2475749..2476315 (-) 567 WP_003423380.1 beta-class carbonic anhydrase -
  CDIF28670_RS12140 (CDIF28670_02417) - 2477002..2477340 (+) 339 WP_003423377.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 610 a.a.        Molecular weight: 68002.81 Da        Isoelectric Point: 6.2912

>NTDB_id=153335 CDIF28670_RS12115 WP_003430476.1 2470845..2472677(-) (rcrQ) [Clostridioides difficile strain DSM 28670]
MSRMGRGPMGKSMGAGQKANDFKGTMRKLIAYLSKFKISIILVIVFAIGSASFSIVGPKILGKATTKIFEGLVSKVSGGN
VGIDFNAIGKILTFLLCLYLISALFSFIQGFIMSGISQKVSYNLRKEISAKLDRLPMKYFDTKTHGEILSRITNDIDTLN
QSLNQSMTQLITSVTTMIGVLIMMLSISGIMTLVAVLILPISMFVISRIIKKSQKYFRYQQEYLGNVNGQVEETYSGQTI
VKAFNREDEVIEEFDKLNDSLYNSAWKSQFLSGIMQPLMMFIGNLGYVMVSILGGWLAIKKTIEVGDIQSFIQYVRNFTQ
PMTQIAQVANLLQSTAAASERVFEFLEEEEEDQIVENAVSIDGLEGKIDFENVNFGYNPNKTIINDFSVNVKPGQKVAIV
GPTGAGKTTIVKLLMRFYDVNSGSILIDGHNIKDFNRSELREMFGMVLQDTWLFSGSIMENIRYGKLNATDEEVIEAAKS
AHVHRFIKTLPDGYKMKLNEEASNVSQGQKQLLTIARAILADPKILILDEATSSVDTRTEVLIQKAMDNLMEGRTSFVIA
HRLSTIRDADMILVMNEGDIVEQGNHEELLKKGGFYANLYNSQFEENEAM

Nucleotide


Download         Length: 1833 bp        

>NTDB_id=153335 CDIF28670_RS12115 WP_003430476.1 2470845..2472677(-) (rcrQ) [Clostridioides difficile strain DSM 28670]
ATGAGTAGAATGGGAAGAGGTCCTATGGGAAAATCTATGGGAGCAGGACAAAAAGCAAATGACTTTAAAGGGACTATGCG
AAAACTAATTGCATATTTATCTAAATTTAAAATATCAATAATTCTAGTAATTGTATTTGCTATTGGTAGTGCATCGTTTT
CTATAGTAGGTCCAAAAATTTTAGGAAAGGCAACTACAAAGATATTTGAAGGGTTAGTGAGTAAAGTTTCTGGAGGGAAT
GTAGGTATAGATTTTAATGCAATTGGAAAAATTTTAACCTTTTTACTTTGTCTTTATTTGATAAGTGCACTGTTCTCTTT
TATACAGGGATTTATAATGAGTGGAATTTCTCAAAAAGTATCCTATAATTTAAGAAAAGAGATTTCAGCAAAATTGGATA
GATTGCCAATGAAGTATTTTGATACTAAGACGCATGGTGAAATATTATCGAGAATTACGAATGATATAGATACTTTAAAT
CAAAGTTTAAATCAAAGTATGACACAGCTTATAACATCAGTAACAACTATGATAGGTGTTTTGATAATGATGTTATCTAT
AAGTGGAATTATGACATTAGTGGCAGTTTTAATATTACCAATATCAATGTTTGTAATTTCAAGAATAATAAAGAAATCAC
AAAAATACTTTAGATATCAACAAGAATATTTAGGAAATGTAAATGGTCAAGTTGAAGAAACTTACAGTGGTCAAACAATA
GTGAAAGCATTTAATCGTGAAGATGAAGTAATTGAAGAGTTTGATAAGTTAAATGATAGTTTGTATAATTCAGCATGGAA
GTCTCAATTTTTATCAGGTATAATGCAACCACTTATGATGTTTATTGGAAACTTGGGATATGTAATGGTGTCAATCTTAG
GAGGTTGGCTTGCAATTAAGAAAACAATTGAGGTTGGTGACATACAGTCATTTATACAATATGTAAGAAACTTTACACAG
CCAATGACTCAGATTGCACAGGTTGCCAATTTATTGCAATCAACAGCAGCAGCTTCTGAAAGAGTATTTGAGTTTTTAGA
AGAGGAAGAAGAAGACCAAATTGTTGAAAATGCAGTTTCAATAGATGGTTTAGAAGGTAAAATTGATTTTGAAAATGTCA
ACTTTGGATACAACCCAAACAAGACTATAATAAATGATTTCTCAGTAAATGTTAAACCTGGTCAAAAAGTTGCTATTGTT
GGACCTACAGGAGCAGGTAAAACTACAATAGTTAAACTTTTAATGAGATTTTATGATGTTAATAGCGGTTCAATACTGAT
TGATGGTCATAATATTAAAGATTTTAATCGTAGTGAACTTAGAGAAATGTTTGGTATGGTCCTTCAAGATACATGGTTAT
TTAGTGGTTCAATTATGGAAAATATAAGATATGGTAAGTTGAATGCTACAGATGAAGAAGTTATAGAGGCTGCTAAATCT
GCACATGTTCATAGATTTATTAAGACATTACCAGATGGATATAAGATGAAATTAAATGAAGAAGCAAGTAATGTTTCTCA
AGGTCAAAAACAATTATTGACTATAGCTCGTGCTATTTTAGCTGATCCTAAAATTTTAATATTAGATGAAGCTACAAGTT
CTGTCGATACTAGAACAGAAGTATTGATTCAAAAAGCTATGGATAATCTTATGGAAGGTAGAACAAGTTTTGTTATAGCC
CACAGATTATCAACTATACGTGATGCTGATATGATTCTTGTAATGAATGAAGGCGATATAGTTGAACAAGGAAATCATGA
GGAACTTCTAAAGAAAGGCGGATTCTATGCTAATCTTTACAATTCTCAATTTGAAGAAAATGAAGCAATGTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(385-533)

ABC transporter transmembrane region (ABC_membrane)

(40-322)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

51.607

96.885

0.5

Multiple sequence alignment