Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   V471_RS02365 Genome accession   NZ_CP015283
Coordinates   464548..465816 (-) Length   422 a.a.
NCBI ID   WP_002885641.1    Uniprot ID   -
Organism   Streptococcus salivarius strain ATCC 25975     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 459548..470816
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V471_RS02330 (V471_02325) - 460845..461354 (-) 510 WP_014712806.1 helix-turn-helix domain-containing protein -
  V471_RS11360 - 461562..461756 (+) 195 WP_072903616.1 hypothetical protein -
  V471_RS02340 (V471_02330) - 461790..462767 (+) 978 WP_070576067.1 replication initiation protein -
  V471_RS02345 (V471_02335) - 462779..462967 (+) 189 WP_000369785.1 DUF3173 domain-containing protein -
  V471_RS02350 (V471_02340) - 462969..464108 (+) 1140 WP_084871069.1 site-specific integrase -
  V471_RS02365 (V471_02355) rarA 464548..465816 (-) 1269 WP_002885641.1 replication-associated recombination protein A Machinery gene
  V471_RS02370 (V471_02360) rpmB 465986..466174 (+) 189 WP_002885786.1 50S ribosomal protein L28 -
  V471_RS02375 (V471_02365) - 466301..466567 (+) 267 WP_002885737.1 IreB family regulatory phosphoprotein -
  V471_RS02380 (V471_02370) ruvX 466567..466986 (+) 420 WP_002887078.1 Holliday junction resolvase RuvX -
  V471_RS02385 (V471_02375) - 467093..467398 (+) 306 WP_002887079.1 DUF1292 domain-containing protein -
  V471_RS02390 (V471_02380) - 467610..469256 (+) 1647 WP_013991296.1 membrane protein -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46582.02 Da        Isoelectric Point: 5.8803

>NTDB_id=153128 V471_RS02365 WP_002885641.1 464548..465816(-) (rarA) [Streptococcus salivarius strain ATCC 25975]
MPDNLALRMRPRTISEVIGQKHLVGEGKIIRRMVEANMLSSMILYGPPGIGKTSIASAIAGTTKFAFRTFNATVDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKAKQDFLLPLLENGNIIMIGATTENPFFSVTPAIRSRVQIFELEPLSNEDIKEAIL
GVLEDKERGFDFDVQLDEDALDFIATATNGDLRSAYNSLDLAVMSTPASEDGLRHITLDTVENSLQRSYITMDKDGDGHY
DVLSALQKSIRGSDVNASLHYAARLVEAGDLPSLARRLTVIAYEDIGLANPDAQVHTVTALEAAQKVGFPEARILIANVV
VDLALSPKSNSAYMAMDAALADLRKSGNLPIPRHLRDGHYAGSKELGNAQDYKYPHAYPEKWVKQQYLPDKLRGVNYFQP
NETGKYERALGANKERIDKLSR

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=153128 V471_RS02365 WP_002885641.1 464548..465816(-) (rarA) [Streptococcus salivarius strain ATCC 25975]
ATGCCAGATAATCTTGCTCTACGCATGCGTCCACGTACAATTTCAGAGGTGATTGGTCAGAAGCATTTGGTTGGTGAAGG
TAAAATTATTCGCCGTATGGTAGAAGCGAATATGCTGTCGTCAATGATTCTCTACGGGCCACCAGGAATCGGGAAGACCT
CAATAGCTAGTGCTATTGCAGGAACAACAAAATTTGCTTTTAGAACCTTTAATGCTACTGTTGATAGCAAGAAACGCCTG
CAGGAAATTGCGGAAGAGGCTAAATTTTCAGGTGGCTTAGTTCTGCTTCTAGATGAGATTCATCGTTTGGATAAAGCTAA
ACAAGACTTTTTATTGCCACTCTTAGAGAATGGCAATATTATCATGATTGGGGCTACAACGGAGAATCCGTTTTTTTCTG
TCACACCAGCCATCCGTAGTCGTGTACAAATATTTGAGTTGGAACCACTCTCTAACGAGGATATTAAGGAAGCTATCCTA
GGTGTTCTAGAGGACAAGGAGCGTGGCTTTGACTTTGATGTCCAGTTAGATGAGGATGCTCTAGATTTTATTGCTACGGC
TACTAATGGTGATTTACGTTCGGCTTATAATTCCTTAGATTTAGCTGTCATGTCGACGCCAGCTTCAGAAGATGGGCTTC
GCCATATTACTTTAGATACAGTGGAAAATAGTTTACAACGTAGCTATATCACCATGGATAAAGACGGTGATGGACACTAT
GATGTGCTTTCTGCTTTGCAAAAATCTATTCGAGGCTCTGATGTTAATGCCAGTCTTCACTATGCAGCACGTTTGGTTGA
AGCAGGAGATCTCCCTAGTCTAGCACGGCGCTTGACTGTGATTGCGTACGAGGATATTGGTTTAGCTAATCCTGATGCGC
AAGTTCACACGGTTACAGCTTTGGAAGCTGCACAGAAAGTAGGTTTCCCAGAGGCGCGTATTTTGATTGCTAATGTAGTT
GTTGACTTAGCTTTATCTCCTAAGTCGAATTCGGCTTATATGGCTATGGATGCTGCCTTGGCAGACCTTAGAAAATCAGG
GAATTTACCTATTCCTCGTCATTTGAGAGATGGACACTATGCTGGAAGCAAGGAACTGGGCAATGCACAAGATTACAAGT
ATCCCCATGCTTATCCTGAAAAGTGGGTCAAACAACAATATCTTCCTGATAAATTAAGAGGTGTGAATTATTTCCAACCC
AATGAAACCGGGAAATATGAAAGAGCTCTTGGAGCTAATAAAGAACGGATCGATAAGTTATCTAGGTAA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(173-251)

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-415)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

60.143

99.289

0.597