Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   V471_RS00850 Genome accession   NZ_CP015283
Coordinates   169633..170418 (-) Length   261 a.a.
NCBI ID   WP_002884784.1    Uniprot ID   -
Organism   Streptococcus salivarius strain ATCC 25975     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 164633..175418
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V471_RS00825 (V471_00830) gatA 165050..166516 (-) 1467 WP_014632690.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  V471_RS00830 (V471_00835) gatC 166516..166818 (-) 303 WP_002884769.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  V471_RS00835 (V471_00840) - 166958..167398 (-) 441 Protein_164 glycosyltransferase -
  V471_RS00840 (V471_00845) - 167419..168858 (-) 1440 WP_014632688.1 6-phospho-beta-glucosidase -
  V471_RS00845 (V471_00850) - 169015..169566 (-) 552 WP_014632687.1 cysteine hydrolase family protein -
  V471_RS00850 (V471_00855) codY 169633..170418 (-) 786 WP_002884784.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  V471_RS00855 (V471_00860) - 170685..171899 (-) 1215 WP_014632686.1 pyridoxal phosphate-dependent aminotransferase -
  V471_RS00860 (V471_00865) - 172259..172711 (+) 453 WP_002891687.1 universal stress protein -
  V471_RS00865 (V471_00870) - 172793..173545 (-) 753 WP_014632685.1 hypothetical protein -
  V471_RS00870 (V471_00875) pflA 173615..174415 (-) 801 WP_014632684.1 pyruvate formate-lyase-activating protein -
  V471_RS00875 (V471_00880) - 174602..175324 (-) 723 WP_014632683.1 LPXTG cell wall anchor domain-containing protein -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 28829.85 Da        Isoelectric Point: 4.3715

>NTDB_id=153103 V471_RS00850 WP_002884784.1 169633..170418(-) (codY) [Streptococcus salivarius strain ATCC 25975]
MANLLAKTRKITSILQRSVDSLEGDLPYNNMAAQLADIIDCNAAIVNGGGALLGFAMKYKTNNDRVEEFFEAKQLPEEYT
RGISRVYDTQENIGIDSDLTIFPVESKDDFPDGLTTIAPIYGGGMRLGSFIIWRNDHDFVDEDLILVEIASTVVGLQLLN
LQTENLEETIRKQTAINMAINTLSYSEIKAVSAILNELDGLEGRLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVLNEGIYDKLKEYE

Nucleotide


Download         Length: 786 bp        

>NTDB_id=153103 V471_RS00850 WP_002884784.1 169633..170418(-) (codY) [Streptococcus salivarius strain ATCC 25975]
ATGGCAAATTTGCTGGCTAAAACACGTAAAATTACATCTATCTTGCAACGCTCAGTAGATAGCTTGGAAGGAGATCTTCC
ATACAACAACATGGCTGCTCAATTGGCGGATATCATTGATTGTAACGCTGCTATCGTTAATGGTGGTGGTGCTCTCCTTG
GTTTTGCCATGAAGTACAAAACCAACAATGATCGTGTGGAGGAGTTTTTTGAAGCCAAACAACTTCCAGAAGAATATACA
CGTGGTATCAGCCGTGTTTATGACACTCAAGAAAACATTGGTATTGACAGTGACTTGACCATTTTCCCTGTGGAGTCAAA
AGATGACTTCCCAGATGGTTTGACTACAATTGCACCTATCTATGGTGGTGGTATGCGTCTTGGTTCTTTCATCATTTGGC
GTAACGATCATGACTTTGTAGATGAAGATCTTATCTTGGTTGAGATTGCCTCTACAGTAGTTGGGTTGCAGTTGTTGAAC
CTTCAAACAGAGAATTTGGAAGAAACAATTCGTAAACAAACAGCTATTAACATGGCTATTAATACCTTGTCTTACTCAGA
AATCAAGGCAGTTTCAGCTATCTTGAATGAGTTGGACGGTTTGGAAGGCCGCTTGACAGCGTCTGTTATCGCTGACCGTA
TTGGAATCACACGTTCAGTTATCGTTAATGCCCTTCGTAAGTTGGAATCAGCTGGTATTATTGAGAGCCGTTCACTCGGT
ATGAAAGGGACTTATCTTAAAGTCCTTAACGAAGGTATCTACGATAAATTGAAAGAATACGAATAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(3-182)

CodY helix-turn-helix domain (HTH_CodY)

(201-261)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

64.981

98.467

0.64
  codY Bacillus subtilis subsp. subtilis str. 168

53.036

94.636

0.502