Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   NX99_RS08730 Genome accession   NZ_CP015282
Coordinates   1874432..1875217 (+) Length   261 a.a.
NCBI ID   WP_002884784.1    Uniprot ID   -
Organism   Streptococcus salivarius strain ATCC 27945     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1869432..1880217
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NX99_RS08705 (NX99_08560) - 1869517..1870245 (+) 729 WP_022495913.1 LPXTG cell wall anchor domain-containing protein -
  NX99_RS08710 (NX99_08565) pflA 1870432..1871232 (+) 801 WP_002891689.1 pyruvate formate-lyase-activating protein -
  NX99_RS08715 (NX99_08570) - 1871302..1872054 (+) 753 WP_002891688.1 hypothetical protein -
  NX99_RS08720 (NX99_08575) - 1872134..1872586 (-) 453 WP_002884397.1 universal stress protein -
  NX99_RS08725 (NX99_08580) - 1872950..1874164 (+) 1215 WP_004183315.1 pyridoxal phosphate-dependent aminotransferase -
  NX99_RS08730 (NX99_08585) codY 1874432..1875217 (+) 786 WP_002884784.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  NX99_RS08735 (NX99_08590) - 1875284..1875835 (+) 552 WP_004183314.1 cysteine hydrolase family protein -
  NX99_RS08740 (NX99_08595) - 1875992..1877431 (+) 1440 WP_084915349.1 6-phospho-beta-glucosidase -
  NX99_RS08745 (NX99_08600) - 1877626..1878834 (+) 1209 WP_084915351.1 glycosyltransferase -
  NX99_RS08750 (NX99_08605) - 1878838..1879719 (+) 882 WP_037611917.1 glycosyltransferase family 2 protein -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 28829.85 Da        Isoelectric Point: 4.3715

>NTDB_id=153076 NX99_RS08730 WP_002884784.1 1874432..1875217(+) (codY) [Streptococcus salivarius strain ATCC 27945]
MANLLAKTRKITSILQRSVDSLEGDLPYNNMAAQLADIIDCNAAIVNGGGALLGFAMKYKTNNDRVEEFFEAKQLPEEYT
RGISRVYDTQENIGIDSDLTIFPVESKDDFPDGLTTIAPIYGGGMRLGSFIIWRNDHDFVDEDLILVEIASTVVGLQLLN
LQTENLEETIRKQTAINMAINTLSYSEIKAVSAILNELDGLEGRLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVLNEGIYDKLKEYE

Nucleotide


Download         Length: 786 bp        

>NTDB_id=153076 NX99_RS08730 WP_002884784.1 1874432..1875217(+) (codY) [Streptococcus salivarius strain ATCC 27945]
ATGGCAAATTTGCTGGCTAAAACACGTAAAATTACATCTATCTTGCAACGCTCAGTAGACAGCTTGGAAGGAGATCTTCC
ATATAACAATATGGCTGCTCAATTGGCGGATATCATTGATTGTAACGCTGCTATCGTTAATGGTGGTGGTGCTCTCCTTG
GTTTTGCCATGAAGTACAAAACCAACAATGATCGTGTAGAAGAGTTTTTTGAAGCTAAACAACTTCCAGAAGAATACACA
CGTGGAATCAGCCGTGTTTATGACACTCAAGAAAACATTGGTATTGACAGTGACTTGACCATTTTCCCTGTGGAATCAAA
AGATGACTTCCCAGATGGTTTGACTACAATTGCCCCTATCTATGGTGGTGGGATGCGTCTTGGTTCTTTCATCATTTGGC
GTAACGACCATGATTTTGTGGATGAAGATCTTATCTTGGTTGAGATTGCCTCTACGGTTGTTGGTTTGCAGTTGTTGAAC
CTTCAAACAGAGAACTTGGAAGAAACAATTCGTAAACAAACAGCTATCAACATGGCAATTAATACCTTGTCTTACTCAGA
AATCAAGGCAGTTTCAGCTATCTTGAATGAGTTGGACGGTTTGGAAGGTCGCTTGACAGCGTCTGTTATCGCTGACCGTA
TCGGAATTACACGTTCAGTTATCGTTAATGCCCTTCGTAAGTTGGAATCAGCTGGTATTATTGAGAGCCGTTCACTCGGT
ATGAAAGGGACTTATCTTAAAGTCCTTAACGAAGGTATCTACGATAAATTGAAAGAATACGAATAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(3-182)

CodY helix-turn-helix domain (HTH_CodY)

(201-261)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

64.981

98.467

0.64
  codY Bacillus subtilis subsp. subtilis str. 168

53.036

94.636

0.502