Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   AEI04_RS06230 Genome accession   NZ_CP012244
Coordinates   1202602..1203117 (-) Length   171 a.a.
NCBI ID   WP_002877326.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CJ509CC45     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1197602..1208117
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AEI04_RS06215 (AEI04_06240) flaA 1197704..1199431 (-) 1728 WP_260627634.1 flagellin -
  AEI04_RS06220 (AEI04_06245) - 1199528..1201345 (-) 1818 WP_260627635.1 motility associated factor glycosyltransferase family protein -
  AEI04_RS06225 (AEI04_06250) - 1201355..1202602 (-) 1248 WP_052776150.1 DUF2920 family protein -
  AEI04_RS06230 (AEI04_06255) ctsG 1202602..1203117 (-) 516 WP_002877326.1 type II secretion system protein Machinery gene
  AEI04_RS06235 (AEI04_06260) tsaD 1203118..1204125 (-) 1008 WP_002892992.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  AEI04_RS06240 (AEI04_06265) - 1204122..1205516 (-) 1395 WP_052776151.1 M99 family carboxypeptidase catalytic domain-containing protein -
  AEI04_RS06245 (AEI04_06270) dxr 1205518..1206588 (-) 1071 WP_052776152.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  AEI04_RS06250 (AEI04_06275) cdsA 1206585..1207310 (-) 726 WP_002858027.1 phosphatidate cytidylyltransferase -
  AEI04_RS06255 (AEI04_06280) - 1207319..1207657 (-) 339 WP_022552380.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18590.45 Da        Isoelectric Point: 6.4665

>NTDB_id=152945 AEI04_RS06230 WP_002877326.1 1202602..1203117(-) (ctsG) [Campylobacter jejuni strain CJ509CC45]
MRKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVIGVENVDLGN
FNGTKEVNFGVGNDKECLKLVFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=152945 AEI04_RS06230 WP_002877326.1 1202602..1203117(-) (ctsG) [Campylobacter jejuni strain CJ509CC45]
ATGAGAAAAGCTTTTACTATATTAGAACTTGTTTTTGTGATTGTTATTTTAGGAATTTTAGCCGCTATTGCTTTACCAAA
AATGAGTTCAAGCAAGGATGAAGCTGAAGTTAGCAAGTCTTTAAACAACCTTAAAACTTTGATCAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAATCGGGGTTGAAAATGTTGATCTTGGCAAT
TTTAACGGCACAAAAGAAGTAAATTTTGGCGTAGGCAATGATAAAGAATGCTTAAAACTTGTTTTTATAAATAAGGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGCTATCATCAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGTGTGATTTTAAGCAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

92.982

100

0.93

Multiple sequence alignment