Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   AEI25_RS06365 Genome accession   NZ_CP012242
Coordinates   1213337..1213852 (-) Length   171 a.a.
NCBI ID   WP_260627867.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CJ055CCUA     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1208337..1218852
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AEI25_RS06350 (AEI25_06345) - 1208441..1210168 (-) 1728 WP_260627864.1 flagellin A -
  AEI25_RS06355 (AEI25_06350) - 1210251..1212077 (-) 1827 WP_260627865.1 motility associated factor glycosyltransferase family protein -
  AEI25_RS06360 (AEI25_06355) - 1212087..1213337 (-) 1251 WP_260627866.1 DUF2920 family protein -
  AEI25_RS06365 (AEI25_06360) ctsG 1213337..1213852 (-) 516 WP_260627867.1 type II secretion system protein Machinery gene
  AEI25_RS06370 (AEI25_06365) tsaD 1213853..1214860 (-) 1008 WP_260627868.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  AEI25_RS06375 (AEI25_06370) - 1214857..1216251 (-) 1395 WP_260627869.1 M99 family carboxypeptidase catalytic domain-containing protein -
  AEI25_RS06380 (AEI25_06375) dxr 1216253..1217323 (-) 1071 WP_134227007.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  AEI25_RS06385 (AEI25_06380) cdsA 1217320..1218045 (-) 726 WP_260627870.1 phosphatidate cytidylyltransferase -
  AEI25_RS06390 (AEI25_06385) - 1218054..1218392 (-) 339 WP_260627871.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18764.61 Da        Isoelectric Point: 5.7840

>NTDB_id=152894 AEI25_RS06365 WP_260627867.1 1213337..1213852(-) (ctsG) [Campylobacter jejuni strain CJ055CCUA]
MRKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLSN
FNGVKEVNFRVGDDKECLKLVFINKADFILMGISSNEASKNAIINAANQTHEDLENVDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGEM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=152894 AEI25_RS06365 WP_260627867.1 1213337..1213852(-) (ctsG) [Campylobacter jejuni strain CJ055CCUA]
ATGAGAAAAGCTTTTACTATATTAGAACTTGTTTTTGTGATCGTTATTTTAGGAATTTTAGCTGCTATTGCTTTACCAAA
AATGAGTTCAAGCAAGGATGAAGCTGAAGTTAGTAAGTCTTTAAATAACCTTAAAACTTTGATCAATGATATAAGCATTT
ATACTTTAAAAAATGACCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGCGGGGTTGAAAATGTCGATCTTAGTAAT
TTTAACGGCGTAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAGAATGCTTAAAACTTGTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAGGCAAGTAAAAATGCTATCATCAACGCAGCCAATCAGACTCATGAAGATT
TAGAAAATGTAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGCGTGATCTTAAGTAAGAATGAAAATTTTAAAAATCTA
GCGAGTAAAACTTATCTTTTAATAGGAGAAATGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

94.152

100

0.942

Multiple sequence alignment