Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   AEH96_RS06475 Genome accession   NZ_CP012235
Coordinates   1243547..1244062 (-) Length   171 a.a.
NCBI ID   WP_002877326.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CJ004CC45     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1238547..1249062
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AEH96_RS06460 (AEH96_06495) - 1238660..1240381 (-) 1722 WP_260627654.1 flagellin A -
  AEH96_RS06465 (AEH96_06500) - 1240469..1242289 (-) 1821 WP_002866756.1 motility associated factor glycosyltransferase family protein -
  AEH96_RS06470 (AEH96_06505) - 1242299..1243547 (-) 1249 Protein_1268 DUF2920 family protein -
  AEH96_RS06475 (AEH96_06510) ctsG 1243547..1244062 (-) 516 WP_002877326.1 type II secretion system protein Machinery gene
  AEH96_RS06480 (AEH96_06515) tsaD 1244063..1245070 (-) 1008 WP_002892992.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  AEH96_RS06485 (AEH96_06520) - 1245067..1246461 (-) 1395 WP_002877328.1 M99 family carboxypeptidase catalytic domain-containing protein -
  AEH96_RS06490 (AEH96_06525) dxr 1246463..1247533 (-) 1071 WP_002866764.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  AEH96_RS06495 (AEH96_06530) cdsA 1247530..1248255 (-) 726 WP_002866765.1 phosphatidate cytidylyltransferase -
  AEH96_RS06500 (AEH96_06535) - 1248264..1248602 (-) 339 WP_002855905.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18590.45 Da        Isoelectric Point: 6.4665

>NTDB_id=152785 AEH96_RS06475 WP_002877326.1 1243547..1244062(-) (ctsG) [Campylobacter jejuni strain CJ004CC45]
MRKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVIGVENVDLGN
FNGTKEVNFGVGNDKECLKLVFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=152785 AEH96_RS06475 WP_002877326.1 1243547..1244062(-) (ctsG) [Campylobacter jejuni strain CJ004CC45]
ATGAGAAAAGCTTTTACTATATTAGAACTTGTTTTTGTAATTGTTATCTTAGGAATTTTAGCCGCTATTGCTTTACCAAA
AATGAGTTCAAGCAAGGATGAAGCTGAAGTTAGCAAGTCTTTAAACAACCTTAAAACTTTGATCAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAATCGGGGTTGAAAATGTTGATCTTGGCAAT
TTTAACGGCACAAAAGAAGTAAATTTTGGCGTAGGCAATGATAAAGAATGCTTAAAACTTGTTTTTATAAATAAGGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGCAAAAATGCTATCATCAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGTGTGATTTTAAGCAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

92.982

100

0.93

Multiple sequence alignment