Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   AEI24_RS06385 Genome accession   NZ_CP012234
Coordinates   1213541..1214044 (-) Length   167 a.a.
NCBI ID   WP_165434198.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CJ048CCUA     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1208541..1219044
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AEI24_RS06370 (AEI24_06330) - 1208642..1210372 (-) 1731 WP_260629291.1 flagellin A -
  AEI24_RS06375 (AEI24_06335) - 1210455..1212281 (-) 1827 WP_165434200.1 motility associated factor glycosyltransferase family protein -
  AEI24_RS06380 (AEI24_06340) - 1212291..1213541 (-) 1251 WP_165434199.1 DUF2920 family protein -
  AEI24_RS06385 (AEI24_06345) ctsG 1213541..1214044 (-) 504 WP_165434198.1 type II secretion system protein Machinery gene
  AEI24_RS06390 (AEI24_06350) tsaD 1214045..1215052 (-) 1008 WP_002934392.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  AEI24_RS06395 (AEI24_06355) - 1215049..1216443 (-) 1395 WP_002934391.1 M99 family carboxypeptidase catalytic domain-containing protein -
  AEI24_RS06400 (AEI24_06360) dxr 1216445..1217515 (-) 1071 WP_002934390.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  AEI24_RS06405 (AEI24_06365) cdsA 1217512..1218237 (-) 726 WP_059110955.1 phosphatidate cytidylyltransferase -
  AEI24_RS06410 (AEI24_06370) - 1218246..1218584 (-) 339 WP_002855905.1 hypothetical protein -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18287.12 Da        Isoelectric Point: 6.4683

>NTDB_id=152760 AEI24_RS06385 WP_165434198.1 1213541..1214044(-) (ctsG) [Campylobacter jejuni strain CJ048CCUA]
MRKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKISGIENVDLSNFNGV
KEVNFRVGDDKECLKLVFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNLASKT
YLLIGGM

Nucleotide


Download         Length: 504 bp        

>NTDB_id=152760 AEI24_RS06385 WP_165434198.1 1213541..1214044(-) (ctsG) [Campylobacter jejuni strain CJ048CCUA]
ATGAGAAAAGCTTTTACTATATTAGAACTTGTTTTTGTGATCGTTATTTTAGGAATTTTAGCTGCTATTGCTTTGCCAAA
AATGAGTTCAAGCAAGGATGAAGCTGAAGTTAGCAAGTCTTTAAATAATCTTAAAACTTTGATCAATGATATAAGCATTT
ATACTTTAAAAAATGACCATTTAAGCTCTATAAAAATAAGTGGGATTGAAAATGTCGATCTTAGTAATTTTAACGGCGTA
AAAGAAGTAAATTTTCGTGTAGGTGATGATAAAGAATGCTTAAAACTTGTTTTTATAAATAAGGCTGATTTTATACTCAT
GGGAATTTCAAGCAATGAGGCAAGTAAAAATGCTATCATCAACGCAGCCAATCAAAGCCATGAAGATTTAGAAAATATAG
ACTTTACAAGCTCTTCTAGCAATAAAGCTTGCGTGATCTTAAGCAAGAATGAAAATTTTAAAAATCTAGCGAGTAAAACT
TATCTTTTAATAGGGGGAATGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

92.398

100

0.946

Multiple sequence alignment