Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   AEH98_RS06595 Genome accession   NZ_CP012233
Coordinates   1247865..1248380 (-) Length   171 a.a.
NCBI ID   WP_002888104.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CJ020CC45     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1242865..1253380
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AEH98_RS08705 - 1243089..1243340 (+) 252 Protein_1287 DUF115 domain-containing protein -
  AEH98_RS06575 (AEH98_06620) pseE 1243337..1245223 (+) 1887 WP_079460011.1 motility associated factor glycosyltransferase family protein -
  AEH98_RS06580 (AEH98_06625) - 1245254..1245742 (-) 489 Protein_1289 flagellin -
  AEH98_RS06585 (AEH98_06630) - 1245744..1246604 (-) 861 Protein_1290 6-hydroxymethylpterin diphosphokinase MptE-like protein -
  AEH98_RS06590 (AEH98_06635) - 1246615..1247865 (-) 1251 WP_002888105.1 DUF2920 family protein -
  AEH98_RS06595 (AEH98_06640) ctsG 1247865..1248380 (-) 516 WP_002888104.1 type II secretion system protein Machinery gene
  AEH98_RS06600 (AEH98_06645) tsaD 1248381..1249388 (-) 1008 WP_002868457.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  AEH98_RS06605 (AEH98_06650) - 1249385..1250779 (-) 1395 WP_002888103.1 M99 family carboxypeptidase catalytic domain-containing protein -
  AEH98_RS06610 (AEH98_06655) dxr 1250781..1251851 (-) 1071 WP_038817243.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  AEH98_RS06615 (AEH98_06660) cdsA 1251848..1252573 (-) 726 WP_002858027.1 phosphatidate cytidylyltransferase -
  AEH98_RS06620 (AEH98_06665) - 1252582..1252920 (-) 339 WP_022552380.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18636.48 Da        Isoelectric Point: 6.4682

>NTDB_id=152733 AEH98_RS06595 WP_002888104.1 1247865..1248380(-) (ctsG) [Campylobacter jejuni strain CJ020CC45]
MKKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLGN
FNGTKEVNFRVGDDKECLKLVFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=152733 AEH98_RS06595 WP_002888104.1 1247865..1248380(-) (ctsG) [Campylobacter jejuni strain CJ020CC45]
ATGAAAAAAGCTTTTACTATATTAGAACTTGTTTTTGTGATTGTTATTTTAGGAATTTTAGCCGCTATTGCTTTACCAAA
AATGAGTTCAAGCAAGGATGAAGCTGAAGTTAGTAAGTCTTTAAACAACCTTAAAACTTTGATTAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGTGGGGTTGAAAATGTCGATCTTGGCAAT
TTTAATGGCACAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAGAATGCTTAAAACTTGTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGCTATCATTAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGCGTGATCTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

94.152

100

0.942

Multiple sequence alignment