Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   AEI06_RS06510 Genome accession   NZ_CP012232
Coordinates   1246972..1247487 (-) Length   171 a.a.
NCBI ID   WP_002888104.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CJ511CC45     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1241972..1252487
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AEI06_RS06495 (AEI06_06530) - 1242084..1243892 (-) 1809 WP_260628515.1 motility associated factor glycosyltransferase family protein -
  AEI06_RS06500 (AEI06_06535) - 1243889..1245712 (-) 1824 WP_071616562.1 motility associated factor glycosyltransferase family protein -
  AEI06_RS06505 (AEI06_06540) - 1245723..1246972 (-) 1250 Protein_1286 DUF2920 family protein -
  AEI06_RS06510 (AEI06_06545) ctsG 1246972..1247487 (-) 516 WP_002888104.1 type II secretion system protein Machinery gene
  AEI06_RS06515 (AEI06_06550) tsaD 1247488..1248495 (-) 1008 WP_002868457.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  AEI06_RS06520 (AEI06_06555) - 1248492..1249886 (-) 1395 WP_002888103.1 M99 family carboxypeptidase catalytic domain-containing protein -
  AEI06_RS06525 (AEI06_06560) dxr 1249888..1250958 (-) 1071 WP_038817243.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  AEI06_RS06530 (AEI06_06565) cdsA 1250955..1251680 (-) 726 WP_002858027.1 phosphatidate cytidylyltransferase -
  AEI06_RS06535 (AEI06_06570) - 1251689..1252027 (-) 339 WP_022552380.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18636.48 Da        Isoelectric Point: 6.4682

>NTDB_id=152705 AEI06_RS06510 WP_002888104.1 1246972..1247487(-) (ctsG) [Campylobacter jejuni strain CJ511CC45]
MKKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLGN
FNGTKEVNFRVGDDKECLKLVFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=152705 AEI06_RS06510 WP_002888104.1 1246972..1247487(-) (ctsG) [Campylobacter jejuni strain CJ511CC45]
ATGAAAAAAGCTTTTACTATATTAGAACTTGTTTTTGTGATTGTTATTTTAGGAATTTTAGCCGCTATTGCTTTACCAAA
AATGAGTTCAAGCAAGGATGAAGCTGAAGTTAGTAAGTCTTTAAACAACCTTAAAACTTTGATTAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGTGGGGTTGAAAATGTCGATCTTGGCAAT
TTTAATGGCACAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAGAATGCTTAAAACTTGTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGCTATCATTAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGCGTGATCTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

94.152

100

0.942

Multiple sequence alignment