Detailed information    

insolico Bioinformatically predicted

Overview


Name   proC   Type   Machinery gene
Locus tag   AEI03_RS03925 Genome accession   NZ_CP012229
Coordinates   760241..760972 (+) Length   243 a.a.
NCBI ID   WP_002859150.1    Uniprot ID   A0AB36G763
Organism   Campylobacter jejuni strain CJ508CC45     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 755241..765972
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AEI03_RS03895 (AEI03_03920) rpsF 755383..755760 (+) 378 WP_002812868.1 30S ribosomal protein S6 -
  AEI03_RS03900 (AEI03_03925) ssb 755769..756320 (+) 552 WP_002877747.1 single-stranded DNA-binding protein -
  AEI03_RS03905 (AEI03_03930) rpsR 756331..756591 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  AEI03_RS03910 (AEI03_03935) lon 756652..759027 (-) 2376 WP_052861434.1 endopeptidase La -
  AEI03_RS03915 (AEI03_03940) - 759044..759691 (-) 648 WP_012006727.1 outer membrane protein assembly factor BamD -
  AEI03_RS03920 (AEI03_03945) fliW 759852..760241 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  AEI03_RS03925 (AEI03_03950) proC 760241..760972 (+) 732 WP_002859150.1 pyrroline-5-carboxylate reductase Machinery gene
  AEI03_RS03930 (AEI03_03955) ctsT 760969..761271 (+) 303 WP_002853046.1 type II secretion system protein Machinery gene
  AEI03_RS03935 (AEI03_03960) - 761268..761930 (+) 663 WP_052861432.1 hypothetical protein -
  AEI03_RS03940 (AEI03_03965) - 761927..762379 (+) 453 WP_002877757.1 hypothetical protein -
  AEI03_RS03945 (AEI03_03970) hemD 762376..763005 (-) 630 WP_002877758.1 uroporphyrinogen-III synthase -
  AEI03_RS03950 (AEI03_03975) thiE 762983..763615 (-) 633 WP_002877759.1 thiamine phosphate synthase -
  AEI03_RS03955 (AEI03_03980) thiD 763605..764417 (-) 813 WP_002877760.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  AEI03_RS03960 (AEI03_03985) - 764414..765100 (-) 687 WP_002866108.1 endonuclease III domain-containing protein -
  AEI03_RS03965 (AEI03_03990) - 765097..765858 (-) 762 WP_002856328.1 ATP-binding protein -

Sequence


Protein


Download         Length: 243 a.a.        Molecular weight: 26559.95 Da        Isoelectric Point: 8.5934

>NTDB_id=152642 AEI03_RS03925 WP_002859150.1 760241..760972(+) (proC) [Campylobacter jejuni strain CJ508CC45]
MLYILANGSMATALAYGLKDDYEICIVGRSIEKLQALAKEGFKTLLYKDFNIEGKDVILAFKPYALENIAQMLKGQARIL
ISVLANVDFEKLQTIKAQNYVRIIPNTAAKYKASTTPYILKNSHFENEILDILKTFGSAYKLDNEIQMNAAMAISGCAPA
FLALIAESIANAGVYEGLSKELSLNLTRSLFKSSSALLEHEHPAIIKENICSPGGVTIKGIKILEQKGIRGSFFEAINAS
SAK

Nucleotide


Download         Length: 732 bp        

>NTDB_id=152642 AEI03_RS03925 WP_002859150.1 760241..760972(+) (proC) [Campylobacter jejuni strain CJ508CC45]
ATGCTCTATATACTTGCAAATGGATCTATGGCAACAGCCTTAGCCTATGGGTTAAAAGATGATTATGAAATTTGTATAGT
AGGAAGAAGTATAGAAAAACTTCAAGCCCTCGCCAAAGAAGGCTTTAAAACCTTACTTTACAAAGATTTTAACATAGAAG
GTAAAGATGTTATTTTAGCATTTAAACCTTATGCTTTAGAAAATATTGCTCAAATGCTAAAAGGACAAGCACGTATCTTA
ATCTCTGTTTTAGCCAATGTTGATTTTGAAAAACTACAAACCATCAAAGCTCAAAATTATGTTAGAATAATACCCAATAC
AGCAGCTAAATACAAGGCTTCAACCACACCATATATACTTAAAAACTCTCATTTTGAAAATGAAATTTTAGACATTTTAA
AAACTTTTGGCTCGGCTTATAAATTAGATAATGAAATACAAATGAATGCAGCTATGGCGATTAGCGGCTGCGCTCCTGCT
TTTTTAGCACTTATAGCAGAAAGCATTGCTAATGCTGGAGTTTATGAAGGTTTGTCAAAAGAACTTAGTCTCAATCTTAC
GCGCTCTTTATTTAAAAGCTCTAGTGCTTTACTAGAACATGAACATCCAGCTATTATCAAAGAAAATATTTGCTCCCCTG
GCGGAGTTACAATAAAAGGCATAAAAATACTCGAACAAAAAGGAATTCGCGGAAGTTTTTTTGAAGCCATAAATGCTAGC
AGCGCTAAATGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

99.588

100

0.996


Multiple sequence alignment