Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   AEH99_RS06275 Genome accession   NZ_CP012227
Coordinates   1215018..1215533 (-) Length   171 a.a.
NCBI ID   WP_002888104.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CJ021CC45     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1210018..1220533
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AEH99_RS08510 - 1211529..1212302 (-) 774 Protein_1234 DUF115 domain-containing protein -
  AEH99_RS08515 (AEH99_06290) - 1212306..1213757 (-) 1452 Protein_1235 6-hydroxymethylpterin diphosphokinase MptE-like protein -
  AEH99_RS06270 (AEH99_06295) - 1213768..1215018 (-) 1251 WP_002888105.1 DUF2920 family protein -
  AEH99_RS06275 (AEH99_06300) ctsG 1215018..1215533 (-) 516 WP_002888104.1 type II secretion system protein Machinery gene
  AEH99_RS06280 (AEH99_06305) tsaD 1215534..1216541 (-) 1008 WP_002868457.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  AEH99_RS06285 (AEH99_06310) - 1216538..1217932 (-) 1395 WP_002888103.1 M99 family carboxypeptidase catalytic domain-containing protein -
  AEH99_RS06290 (AEH99_06315) dxr 1217934..1219004 (-) 1071 WP_038817243.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  AEH99_RS06295 (AEH99_06320) cdsA 1219001..1219726 (-) 726 WP_002858027.1 phosphatidate cytidylyltransferase -
  AEH99_RS06300 (AEH99_06325) - 1219735..1220073 (-) 339 WP_022552380.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18636.48 Da        Isoelectric Point: 6.4682

>NTDB_id=152598 AEH99_RS06275 WP_002888104.1 1215018..1215533(-) (ctsG) [Campylobacter jejuni strain CJ021CC45]
MKKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLGN
FNGTKEVNFRVGDDKECLKLVFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=152598 AEH99_RS06275 WP_002888104.1 1215018..1215533(-) (ctsG) [Campylobacter jejuni strain CJ021CC45]
ATGAAAAAAGCTTTTACTATATTAGAACTTGTTTTTGTGATTGTTATTTTAGGAATTTTAGCCGCTATTGCTTTACCAAA
AATGAGTTCAAGCAAGGATGAAGCTGAAGTTAGTAAGTCTTTAAACAACCTTAAAACTTTGATTAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGTGGGGTTGAAAATGTCGATCTTGGCAAT
TTTAATGGCACAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAGAATGCTTAAAACTTGTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGCTATCATTAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGCGTGATCTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

94.152

100

0.942

Multiple sequence alignment