Detailed information    

insolico Bioinformatically predicted

Overview


Name   proC   Type   Machinery gene
Locus tag   AEI17_RS07285 Genome accession   NZ_CP012216
Coordinates   1396725..1397456 (+) Length   243 a.a.
NCBI ID   WP_002859150.1    Uniprot ID   A0AB36G763
Organism   Campylobacter jejuni strain CJ074CC443     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1391725..1402456
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AEI17_RS07255 (AEI17_07320) rpsF 1391868..1392245 (+) 378 WP_002853062.1 30S ribosomal protein S6 -
  AEI17_RS07260 (AEI17_07325) ssb 1392254..1392805 (+) 552 WP_002853013.1 single-stranded DNA-binding protein -
  AEI17_RS07265 (AEI17_07330) rpsR 1392816..1393076 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  AEI17_RS07270 (AEI17_07335) lon 1393136..1395511 (-) 2376 WP_002888315.1 endopeptidase La -
  AEI17_RS07275 (AEI17_07340) - 1395528..1396175 (-) 648 WP_002877748.1 outer membrane protein assembly factor BamD -
  AEI17_RS07280 (AEI17_07345) fliW 1396336..1396725 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  AEI17_RS07285 (AEI17_07350) proC 1396725..1397456 (+) 732 WP_002859150.1 pyrroline-5-carboxylate reductase Machinery gene
  AEI17_RS07290 (AEI17_07355) ctsT 1397453..1397755 (+) 303 WP_002853046.1 type II secretion system protein Machinery gene
  AEI17_RS07295 (AEI17_07360) - 1397752..1398414 (+) 663 WP_044257982.1 hypothetical protein -
  AEI17_RS07300 (AEI17_07365) - 1398411..1398863 (+) 453 WP_002859148.1 hypothetical protein -
  AEI17_RS07305 (AEI17_07370) hemD 1398860..1399489 (-) 630 WP_002859147.1 uroporphyrinogen-III synthase -
  AEI17_RS07310 (AEI17_07375) thiE 1399467..1400099 (-) 633 WP_002852670.1 thiamine phosphate synthase -
  AEI17_RS07315 (AEI17_07380) thiD 1400089..1400901 (-) 813 WP_002867189.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  AEI17_RS07320 (AEI17_07385) - 1400898..1401584 (-) 687 WP_002852847.1 endonuclease III domain-containing protein -
  AEI17_RS07325 (AEI17_07390) - 1401581..1402342 (-) 762 WP_002852748.1 ATP-binding protein -

Sequence


Protein


Download         Length: 243 a.a.        Molecular weight: 26559.95 Da        Isoelectric Point: 8.5934

>NTDB_id=152439 AEI17_RS07285 WP_002859150.1 1396725..1397456(+) (proC) [Campylobacter jejuni strain CJ074CC443]
MLYILANGSMATALAYGLKDDYEICIVGRSIEKLQALAKEGFKTLLYKDFNIEGKDVILAFKPYALENIAQMLKGQARIL
ISVLANVDFEKLQTIKAQNYVRIIPNTAAKYKASTTPYILKNSHFENEILDILKTFGSAYKLDNEIQMNAAMAISGCAPA
FLALIAESIANAGVYEGLSKELSLNLTRSLFKSSSALLEHEHPAIIKENICSPGGVTIKGIKILEQKGIRGSFFEAINAS
SAK

Nucleotide


Download         Length: 732 bp        

>NTDB_id=152439 AEI17_RS07285 WP_002859150.1 1396725..1397456(+) (proC) [Campylobacter jejuni strain CJ074CC443]
ATGCTCTATATACTTGCAAATGGATCTATGGCAACAGCCTTAGCCTATGGGTTAAAAGATGATTATGAAATTTGTATAGT
AGGAAGAAGTATAGAAAAACTTCAAGCCCTCGCCAAAGAAGGCTTTAAAACCTTACTTTACAAAGATTTTAACATAGAAG
GTAAAGATGTTATTTTAGCATTTAAACCTTATGCTTTAGAAAATATTGCTCAAATGCTAAAAGGACAAGCACGTATCTTA
ATCTCTGTTTTAGCCAATGTTGATTTTGAAAAACTACAAACCATCAAAGCTCAAAATTATGTTAGAATAATACCCAATAC
AGCAGCTAAATACAAGGCTTCAACCACACCATATATACTTAAAAACTCTCATTTTGAAAATGAAATTTTAGACATTTTAA
AAACTTTTGGCTCGGCTTATAAATTAGATAATGAAATACAAATGAATGCAGCTATGGCGATTAGCGGCTGCGCTCCTGCT
TTTTTAGCACTTATAGCAGAAAGCATTGCTAATGCTGGAGTTTATGAAGGTTTGTCAAAAGAACTTAGTCTCAATCTTAC
GCGCTCTTTATTTAAAAGCTCTAGTGCTTTACTAGAACATGAACATCCAGCTATTATCAAAGAAAATATTTGCTCCCCTG
GCGGAGTTACAATAAAAGGCATAAAAATACTCGAACAAAAAGGAATTCGCGGAAGTTTTTTTGAAGCCATAAATGCTAGC
AGCGCTAAATGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

99.588

100

0.996


Multiple sequence alignment