Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   AEI17_RS01960 Genome accession   NZ_CP012216
Coordinates   363851..364366 (-) Length   171 a.a.
NCBI ID   WP_002888104.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CJ074CC443     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 358851..369366
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AEI17_RS01945 (AEI17_01950) - 358961..360769 (-) 1809 WP_115769678.1 motility associated factor glycosyltransferase family protein -
  AEI17_RS01950 (AEI17_01955) - 360766..362589 (-) 1824 WP_115769679.1 motility associated factor glycosyltransferase family protein -
  AEI17_RS01955 (AEI17_01960) - 362600..363851 (-) 1252 Protein_386 DUF2920 family protein -
  AEI17_RS01960 (AEI17_01965) ctsG 363851..364366 (-) 516 WP_002888104.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  AEI17_RS01965 (AEI17_01970) tsaD 364367..365374 (-) 1008 WP_002868457.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  AEI17_RS01970 (AEI17_01975) - 365371..366765 (-) 1395 WP_002888103.1 M99 family carboxypeptidase catalytic domain-containing protein -
  AEI17_RS01975 (AEI17_01980) dxr 366767..367837 (-) 1071 WP_002867315.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  AEI17_RS01980 (AEI17_01985) cdsA 367834..368559 (-) 726 WP_002888102.1 phosphatidate cytidylyltransferase -
  AEI17_RS01985 (AEI17_01990) - 368568..368906 (-) 339 WP_002852397.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18636.48 Da        Isoelectric Point: 6.4682

>NTDB_id=152423 AEI17_RS01960 WP_002888104.1 363851..364366(-) (ctsG) [Campylobacter jejuni strain CJ074CC443]
MKKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLGN
FNGTKEVNFRVGDDKECLKLVFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=152423 AEI17_RS01960 WP_002888104.1 363851..364366(-) (ctsG) [Campylobacter jejuni strain CJ074CC443]
ATGAAAAAAGCTTTTACTATATTAGAACTTGTTTTTGTGATTGTTATTTTAGGAATTTTAGCCGCTATTGCTTTACCAAA
AATGAGTTCAAGCAAGGATGAAGCTGAAGTTAGTAAGTCTTTAAACAACCTTAAAACTTTGATTAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGTGGGGTTGAAAATGTCGATCTTGGCAAT
TTTAATGGCACAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAGAATGCTTAAAACTTGTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGCTATCATTAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGCGTGATCTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

94.152

100

0.942

Multiple sequence alignment