Detailed information NTG0151744

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: A4U84_RS02370
• Genome accession: NZ_CP015099
• Coordinates: 536557..537900 (-)
• Length: 447 a.a.
• NCBI ID: WP_062923946.1
• Uniprot ID: -
• Organism: Glaesserella parasuis strain SC1401
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 531557..542900

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
A4U84_RS02350 (A4U84_02350)	-	533043..533453 (-)	411	WP_021110459.1	ExbD/TolR family protein	-
A4U84_RS02355 (A4U84_02355)	-	533453..534121 (-)	669	WP_010785999.1	MotA/TolQ/ExbB proton channel family protein	-
A4U84_RS02360 (A4U84_02360)	-	534139..534906 (-)	768	WP_021117897.1	energy transducer TonB	-
A4U84_RS02365 (A4U84_02365)	-	535082..536554 (+)	1473	WP_062923945.1	surface lipoprotein assembly modifier	-
A4U84_RS02370 (A4U84_02370)	rarA	536557..537900 (-)	1344	WP_062923946.1	replication-associated recombination protein A	Machinery gene
A4U84_RS02375 (A4U84_02375)	mreD	537900..538388 (-)	489	WP_005710534.1	rod shape-determining protein MreD	-
A4U84_RS02380 (A4U84_02380)	mreC	538388..539437 (-)	1050	WP_005710533.1	rod shape-determining protein MreC	-
A4U84_RS02385 (A4U84_02385)	-	539529..540581 (-)	1053	WP_005710531.1	rod shape-determining protein	-
A4U84_RS02390 (A4U84_02390)	pntA	540858..542390 (+)	1533	WP_062923947.1	Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha	-

Sequence

Protein

• Length: 447 a.a.
• Molecular weight: 50138.03 Da
• Isoelectric Point: 6.3274

>NTDB_id=151744 A4U84_RS02370 WP_062923946.1 536557..537900(-) (rarA) [Glaesserella parasuis strain SC1401]
MNSLSFDFSADFRPLSARMRPRTLAEYVGQSHLIGEGKPLRRAIEAGHSHSMIFWGPPGTGKTTLAEIIANELDAEVERL
SAVTSGIKEIREAIEKAKLNRQSGRRTLLFVDEVHRFNKSQQDAFLPHIEDGTIIFIGATTENPSFELNNALLSRARIYI
LKPLQAVDILKILQNAIADKERGLGNEKLIIQDDVLQLLADYVNGDGRFSLNCLELMCDMAEQLPQGKLLDKALLTEVLG
ERQARFDKGGDRYYDLISALHKSIRGSSPDGALYWYARILTAGGDPLYVARRLLAIASEDIGNADPRAMQVALAAWDCYT
RVGAYEGERAIAQAVIYLAVAPKSNAVYTAFKQAKRLAQEGKDYDVPEHLRNAPTNLMKSLGYGEEYRYAHDEPNAYAAG
ENYFPPELKDTQFYFPTERGMEKQIKEKMAWLKGLDLQSEVQRYNKQ

Nucleotide

• Length: 1344 bp

>NTDB_id=151744 A4U84_RS02370 WP_062923946.1 536557..537900(-) (rarA) [Glaesserella parasuis strain SC1401]
ATGAACAGCTTATCTTTCGATTTTTCTGCGGATTTTCGTCCCCTTTCCGCTCGAATGCGACCACGCACTTTAGCTGAATA
TGTCGGACAATCACACCTGATCGGCGAAGGTAAGCCCCTACGCCGAGCGATTGAAGCAGGGCATAGCCACTCAATGATTT
TCTGGGGCCCACCAGGAACAGGCAAAACCACCCTTGCAGAAATTATCGCAAACGAACTTGATGCCGAAGTTGAACGCCTA
TCCGCCGTTACCAGCGGTATCAAAGAGATCCGAGAAGCCATCGAAAAAGCCAAACTCAACCGACAATCCGGCAGACGTAC
TTTACTCTTTGTTGATGAAGTTCATCGTTTTAACAAAAGCCAACAAGATGCCTTTTTACCCCACATTGAAGACGGCACCA
TTATTTTTATCGGAGCGACGACTGAAAATCCGTCCTTTGAACTGAATAACGCCTTGCTGTCACGGGCAAGAATTTACATT
CTCAAACCATTACAAGCGGTCGATATTCTAAAAATTTTGCAAAATGCCATTGCAGACAAAGAACGTGGACTAGGCAATGA
AAAACTCATTATTCAAGATGATGTGCTTCAACTGCTGGCGGATTATGTCAATGGTGACGGACGTTTTTCTCTCAACTGCC
TTGAATTAATGTGCGATATGGCAGAGCAATTACCACAAGGAAAATTACTGGATAAAGCCTTGCTCACCGAAGTGTTAGGC
GAACGCCAAGCCCGTTTTGACAAAGGTGGCGACCGCTATTACGACCTGATTTCCGCCTTACATAAATCCATTCGAGGCTC
TTCCCCTGACGGTGCATTGTACTGGTATGCTCGTATTTTAACCGCTGGAGGCGATCCACTGTATGTTGCTCGCCGACTAC
TTGCGATAGCCTCAGAAGATATAGGCAATGCCGACCCAAGGGCAATGCAAGTCGCCCTTGCAGCGTGGGATTGTTATACC
AGAGTAGGGGCTTACGAAGGCGAACGGGCTATCGCTCAAGCGGTGATTTACCTTGCCGTTGCCCCAAAAAGTAATGCCGT
TTACACCGCATTCAAACAAGCCAAACGCCTAGCTCAAGAAGGCAAGGATTACGATGTTCCCGAACATCTGCGTAACGCAC
CGACTAACTTAATGAAATCCTTAGGTTACGGCGAAGAATACCGCTACGCCCACGACGAACCTAACGCCTACGCCGCAGGG
GAAAACTACTTCCCCCCTGAACTGAAAGATACCCAATTCTACTTCCCAACCGAACGTGGAATGGAAAAGCAGATCAAAGA
AAAAATGGCGTGGTTGAAAGGATTAGATTTGCAGAGTGAGGTGCAGAGGTATAACAAACAATAA

Domains

Predicted by InterProScan.

• MgsA AAA+ ATPase C terminal (MgsA_C) (266-432)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (19-143)

• AAA C-terminal domain (AAA_assoc_2) (186-265)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	39.512	91.723	0.362