Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   AC241_RS18880 Genome accession   NZ_CP012099
Coordinates   3697144..3697923 (-) Length   259 a.a.
NCBI ID   WP_000421290.1    Uniprot ID   A0A9W5VKA1
Organism   Bacillus thuringiensis strain HS18-1     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3692144..3702923
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AC241_RS18855 (AC241_18870) uppS 3692891..3693667 (-) 777 WP_000971296.1 isoprenyl transferase -
  AC241_RS18860 (AC241_18875) frr 3693753..3694310 (-) 558 WP_000531505.1 ribosome recycling factor -
  AC241_RS18865 (AC241_18880) pyrH 3694313..3695035 (-) 723 WP_000042669.1 UMP kinase -
  AC241_RS18870 (AC241_18885) tsf 3695102..3695989 (-) 888 WP_016080531.1 translation elongation factor Ts -
  AC241_RS18875 (AC241_18890) rpsB 3696093..3696794 (-) 702 WP_000111485.1 30S ribosomal protein S2 -
  AC241_RS18880 (AC241_18895) codY 3697144..3697923 (-) 780 WP_000421290.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  AC241_RS18885 (AC241_18900) hslU 3698001..3699392 (-) 1392 WP_000550084.1 ATP-dependent protease ATPase subunit HslU -
  AC241_RS18890 (AC241_18905) hslV 3699415..3699957 (-) 543 WP_000526274.1 ATP-dependent protease proteolytic subunit HslV -
  AC241_RS18895 (AC241_18910) xerC 3700000..3700899 (-) 900 WP_016080529.1 tyrosine recombinase XerC -
  AC241_RS18900 (AC241_18915) trmFO 3700965..3702269 (-) 1305 WP_016080528.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28793.05 Da        Isoelectric Point: 4.7165

>NTDB_id=151394 AC241_RS18880 WP_000421290.1 3697144..3697923(-) (codY) [Bacillus thuringiensis strain HS18-1]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLQELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=151394 AC241_RS18880 WP_000421290.1 3697144..3697923(-) (codY) [Bacillus thuringiensis strain HS18-1]
ATGGAATTATTAGCAAAAACGAGAAAATTAAATGCGTTATTACAGAGCGCTGCAGGGAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATTGAAGCAAACGTGTTCGTTGTAAGTCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAAAATGAGCGTATGAAACAAATGCTTGCAGAGCGTCAGTTCCCGGAAGAATATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAATTTAGATGTGAACAGTGCTTATACAGCATTCCCGGTAGAAAACAGAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTATTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATCCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATCTTACGTGAAAAAGCAGAA
GAAATCGAAGAGGAAGCACGTAGTAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
TGAGCACATCTTCGAAGAATTAAATGGAACAGAAGGTTTACTTGTTGCAAGTAAAATCGCTGATCGTGTAGGAATTACTC
GTTCTGTAATCGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTTATTGAGTCTCGCTCTTTAGGTATGAAAGGAACA
TACATTAAAGTGTTAAACGACAAGTTTCTACAGGAACTTGCTAAATTAAAAACAAACTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

81.467

100

0.815
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.667

98.456

0.459

Multiple sequence alignment