Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   BSM4216_RS06495 Genome accession   NZ_CP012024
Coordinates   1371220..1371999 (+) Length   259 a.a.
NCBI ID   WP_048623155.1    Uniprot ID   -
Organism   Bacillus smithii strain DSM 4216     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1366220..1376999
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSM4216_RS06475 (BSM4216_1572) trmFO 1366877..1368187 (+) 1311 WP_169799135.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  BSM4216_RS06480 (BSM4216_1573) xerC 1368247..1369140 (+) 894 WP_003354568.1 tyrosine recombinase XerC -
  BSM4216_RS06485 (BSM4216_1574) hslV 1369162..1369704 (+) 543 WP_003354569.1 ATP-dependent protease subunit HslV -
  BSM4216_RS06490 (BSM4216_1575) hslU 1369719..1371131 (+) 1413 WP_003354570.1 HslU--HslV peptidase ATPase subunit -
  BSM4216_RS06495 (BSM4216_1576) codY 1371220..1371999 (+) 780 WP_048623155.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  BSM4216_RS06500 (BSM4216_1578) flgB 1372594..1372986 (+) 393 WP_048623156.1 flagellar basal body rod protein FlgB -
  BSM4216_RS06505 (BSM4216_1579) flgC 1372989..1373450 (+) 462 WP_048623157.1 flagellar basal body rod protein FlgC -
  BSM4216_RS06510 (BSM4216_1580) fliE 1373492..1373803 (+) 312 WP_048623158.1 flagellar hook-basal body complex protein FliE -
  BSM4216_RS06515 (BSM4216_1581) fliF 1373851..1375443 (+) 1593 WP_048623159.1 flagellar basal-body MS-ring/collar protein FliF -
  BSM4216_RS06520 (BSM4216_1582) fliG 1375455..1376468 (+) 1014 WP_048623160.1 flagellar motor switch protein FliG -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29034.61 Da        Isoelectric Point: 5.5339

>NTDB_id=150504 BSM4216_RS06495 WP_048623155.1 1371220..1371999(+) (codY) [Bacillus smithii strain DSM 4216]
MDLLTKTRKINAMLQKAAGKPVNFKEMAITMAKVIGANVFVVSRRGKLLGFAVHQQIENERMKKMLEERRFPEEYTNNLF
NIKETSPNLDIDSEYTAFPVENKDLFRNGLTTIVPIVGGGERLGTLILARLNEQFSDDDLILAEYGATVVGMEILREKTE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGKEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLVELEKLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=150504 BSM4216_RS06495 WP_048623155.1 1371220..1371999(+) (codY) [Bacillus smithii strain DSM 4216]
ATGGATCTATTAACAAAAACTAGAAAAATTAATGCGATGCTACAAAAAGCTGCAGGAAAACCTGTGAATTTTAAAGAAAT
GGCGATCACGATGGCCAAAGTGATTGGAGCCAACGTGTTTGTGGTAAGCCGTCGAGGAAAATTGCTCGGATTTGCCGTTC
ATCAGCAAATTGAAAATGAGCGTATGAAAAAAATGCTGGAAGAACGCCGTTTTCCGGAAGAATATACGAATAATTTGTTC
AACATTAAAGAAACTTCTCCAAACTTGGATATCGACAGTGAATATACTGCTTTTCCGGTTGAGAACAAAGACTTGTTCAG
AAATGGCTTAACAACAATCGTGCCAATCGTGGGCGGAGGAGAGCGTCTTGGAACTCTCATACTTGCCCGCTTGAATGAAC
AATTTTCAGACGATGACTTGATCTTGGCGGAATATGGAGCTACTGTAGTCGGAATGGAAATTTTACGTGAAAAAACGGAA
GAAATTGAAGAAGAAGCCCGTAGCAAAGCGGTTGTTCAAATGGCTATCAGTTCGCTCTCTTACAGTGAATTGGAAGCGAT
CGAACATATATTTGAGGAACTGGACGGCAAAGAAGGGCTGTTAGTGGCTTCGAAAATCGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTCAACGCCCTTCGCAAACTGGAAAGTGCCGGAGTGATCGAATCACGCTCTCTTGGAATGAAAGGTACT
TATATTAAAGTATTAAACGATAAATTTTTAGTGGAACTTGAAAAATTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

85.714

100

0.857
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.773

95.367

0.456

Multiple sequence alignment