Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   PGJ_RS00730 Genome accession   NZ_CP011996
Coordinates   177508..178248 (+) Length   246 a.a.
NCBI ID   WP_005875257.1    Uniprot ID   A0A0E2LU95
Organism   Porphyromonas gingivalis AJW4     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 172508..183248
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PGJ_RS00710 (PGJ_00001480) aspS 172950..174713 (-) 1764 WP_053443919.1 aspartate--tRNA ligase -
  PGJ_RS10915 - 174899..175147 (-) 249 WP_144419659.1 DUF1661 domain-containing protein -
  PGJ_RS00715 (PGJ_00001500) ribD 175144..176136 (-) 993 WP_053443920.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  PGJ_RS00720 (PGJ_00001510) prmC 176161..177042 (+) 882 WP_021663368.1 peptide chain release factor N(5)-glutamine methyltransferase -
  PGJ_RS00725 (PGJ_00001520) - 177039..177524 (+) 486 WP_053443921.1 regulatory protein RecX -
  PGJ_RS00730 (PGJ_00001530) comF 177508..178248 (+) 741 WP_005875257.1 ComF family protein Machinery gene
  PGJ_RS00735 (PGJ_00001540) - 178378..180447 (-) 2070 WP_053443922.1 M13 family metallopeptidase -
  PGJ_RS00740 (PGJ_00001550) - 180466..181368 (-) 903 WP_039417049.1 nucleotidyltransferase -
  PGJ_RS00745 (PGJ_00001560) - 181788..182369 (-) 582 WP_004583806.1 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27475.95 Da        Isoelectric Point: 10.0451

>NTDB_id=149986 PGJ_RS00730 WP_005875257.1 177508..178248(+) (comF) [Porphyromonas gingivalis AJW4]
MRKTANGTGRHIRLLIRKVLDLFFPRYCPVCDSLLAETEIGVCPRCMVRMPRYIEGMQYGLDRLNGDVYIDALYSLFIFK
EDGGVRPMIHALKYGGYSEIGEMLGRMAGRSYPFLSKDYDLIVPVPLHPRKQRKRGYNQALLIAQGLSRVTGIPVQEGLR
RKVYTDSQTGQSYSERKSAMKGKFALSPNTRVAGIRVLLVDDVLTTGATVQAAAEPLAEAFAAKIGVLVAAVTKRPSNWS
HYSDER

Nucleotide


Download         Length: 741 bp        

>NTDB_id=149986 PGJ_RS00730 WP_005875257.1 177508..178248(+) (comF) [Porphyromonas gingivalis AJW4]
ATGAGGAAGACAGCTAACGGTACGGGCCGGCATATCCGATTGCTGATTCGTAAGGTGTTGGATCTGTTTTTCCCTCGCTA
TTGTCCGGTATGCGACAGCTTGCTCGCCGAGACGGAGATCGGGGTCTGTCCTCGTTGCATGGTGAGAATGCCACGGTATA
TCGAAGGGATGCAATATGGATTAGATCGTCTGAATGGGGATGTTTATATCGACGCGCTGTACAGCCTTTTTATTTTCAAA
GAGGACGGGGGTGTAAGGCCTATGATACACGCACTAAAATATGGAGGATACAGTGAGATCGGCGAAATGCTCGGACGAAT
GGCCGGCCGATCCTATCCTTTCCTGTCCAAGGATTACGATCTGATAGTGCCGGTTCCTTTACACCCACGCAAACAACGTA
AGCGTGGCTACAATCAGGCACTCCTCATCGCACAGGGATTAAGTCGCGTAACGGGAATACCTGTTCAAGAAGGTTTGCGT
AGAAAGGTATATACGGACAGTCAGACCGGACAGTCCTATTCGGAACGAAAGTCAGCCATGAAAGGGAAGTTTGCCCTCTC
CCCGAATACGCGCGTGGCCGGTATCCGTGTTCTTTTGGTGGACGATGTGCTGACTACCGGAGCTACGGTACAGGCTGCGG
CCGAGCCATTGGCAGAAGCCTTTGCGGCCAAGATCGGTGTACTGGTGGCAGCCGTCACCAAACGTCCCTCGAATTGGTCT
CATTATTCTGATGAGCGATAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(140-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0E2LU95

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Porphyromonas gingivalis W83

100

100

1

Multiple sequence alignment