Detailed information
Bioinformatically predicted
Overview
| Name | rapF | Type | Regulator |
| Locus tag | B34_RS17860 | Genome accession | NZ_CP014793 |
| Coordinates | 3414236..3415411 (+) | Length | 391 a.a. |
| NCBI ID | WP_080624175.1 | Uniprot ID | - |
| Organism | Bacillus licheniformis strain SCDB 34 | ||
| Function | inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation |
||
Genomic Context
Location: 3409236..3420411
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| B34_RS17840 (B34_03608) | - | 3410199..3411188 (+) | 990 | WP_032730587.1 | bifunctional lytic transglycosylase/C40 family peptidase | - |
| B34_RS17845 (B34_03609) | - | 3411203..3411709 (+) | 507 | WP_080624172.1 | hypothetical protein | - |
| B34_RS17850 (B34_03610) | - | 3411772..3412152 (+) | 381 | WP_129134130.1 | DUF4467 domain-containing protein | - |
| B34_RS17855 (B34_03611) | - | 3412218..3413966 (-) | 1749 | WP_080624174.1 | DUF4209 domain-containing protein | - |
| B34_RS17860 (B34_03612) | rapF | 3414236..3415411 (+) | 1176 | WP_080624175.1 | Rap family tetratricopeptide repeat protein | Regulator |
| B34_RS17865 (B34_03613) | - | 3415368..3415487 (+) | 120 | WP_080624176.1 | phosphatase | - |
| B34_RS17870 (B34_03614) | - | 3415570..3416277 (+) | 708 | WP_080624177.1 | hypothetical protein | - |
| B34_RS24545 | - | 3416520..3416603 (+) | 84 | Protein_3519 | hypothetical protein | - |
| B34_RS17880 (B34_03615) | - | 3416845..3417195 (-) | 351 | WP_011197573.1 | hypothetical protein | - |
| B34_RS17885 (B34_03616) | - | 3417185..3417430 (-) | 246 | WP_016885180.1 | helix-turn-helix transcriptional regulator | - |
| B34_RS17890 (B34_03617) | - | 3418062..3419090 (-) | 1029 | WP_003179161.1 | fatty acid desaturase | - |
| B34_RS17895 (B34_03618) | cspC | 3419689..3419892 (+) | 204 | WP_003179166.1 | cold shock protein CspC | - |
Sequence
Protein
Download Length: 391 a.a. Molecular weight: 46471.11 Da Isoelectric Point: 5.2971
>NTDB_id=149948 B34_RS17860 WP_080624175.1 3414236..3415411(+) (rapF) [Bacillus licheniformis strain SCDB 34]
MRGVFLDKDKIPYDLVTKKLNEWYTSIKNDQVEKAEIIKTEVEKELLNMEENQDALLYYQLLEFRHEIMLSYMKSKEIEK
LHNAYETIKEIEEQGQLTGMLEYYYYFFKGMYEFRRKELTTAISAYRIAESKLSEVEDEIEKAEFFFKVSYVYYYMKQTY
FSMNYANRALKIFREYEEYAVQTLRCQFIVAGNLIDSLEYECALQQFLNSLELAKKNNIEHLIAMSHMNIGICYDELKEY
KKASQHLVLALEIFEKSKHSFLTKTLFTLTYVEAKQQNYDVALSYFRKGRFIADKSNDKEYSAKFKILEGLFFSDGDIQL
IKNAFSYLASRKMFADVENFSIEVADYFHEQGNLMLSNEYYRMSIEARRKIKKGEIIDENQPDSIGSSGIR
MRGVFLDKDKIPYDLVTKKLNEWYTSIKNDQVEKAEIIKTEVEKELLNMEENQDALLYYQLLEFRHEIMLSYMKSKEIEK
LHNAYETIKEIEEQGQLTGMLEYYYYFFKGMYEFRRKELTTAISAYRIAESKLSEVEDEIEKAEFFFKVSYVYYYMKQTY
FSMNYANRALKIFREYEEYAVQTLRCQFIVAGNLIDSLEYECALQQFLNSLELAKKNNIEHLIAMSHMNIGICYDELKEY
KKASQHLVLALEIFEKSKHSFLTKTLFTLTYVEAKQQNYDVALSYFRKGRFIADKSNDKEYSAKFKILEGLFFSDGDIQL
IKNAFSYLASRKMFADVENFSIEVADYFHEQGNLMLSNEYYRMSIEARRKIKKGEIIDENQPDSIGSSGIR
Nucleotide
Download Length: 1176 bp
>NTDB_id=149948 B34_RS17860 WP_080624175.1 3414236..3415411(+) (rapF) [Bacillus licheniformis strain SCDB 34]
TTGCGGGGTGTTTTCTTAGATAAAGATAAAATTCCGTACGACTTAGTCACGAAAAAATTAAATGAATGGTATACATCAAT
AAAAAATGATCAAGTTGAAAAAGCAGAGATTATAAAAACAGAAGTAGAGAAAGAATTGCTAAACATGGAAGAAAACCAAG
ATGCCCTTTTATATTATCAGCTATTAGAATTTAGACATGAGATAATGCTGAGTTATATGAAATCTAAGGAAATAGAAAAA
CTCCATAATGCTTATGAGACCATAAAAGAAATTGAAGAACAAGGGCAATTAACTGGCATGTTGGAATACTATTATTACTT
CTTTAAGGGAATGTACGAGTTTAGACGTAAAGAATTAACTACGGCAATAAGTGCCTATCGAATAGCTGAATCAAAGTTGT
CGGAAGTTGAGGATGAAATAGAAAAAGCAGAGTTTTTTTTCAAAGTGTCCTATGTATATTATTATATGAAACAAACGTAT
TTTTCCATGAATTATGCCAATCGGGCGTTAAAAATATTTAGAGAGTATGAAGAATATGCTGTCCAGACTCTGCGTTGTCA
ATTTATTGTAGCGGGAAACTTAATTGACTCATTAGAGTATGAATGCGCTTTGCAACAATTTTTAAATTCCTTGGAACTTG
CCAAGAAAAATAACATAGAGCATTTAATTGCAATGTCACACATGAATATTGGGATCTGTTATGATGAATTGAAGGAATAT
AAAAAGGCTTCACAACATTTAGTCTTAGCGTTAGAAATTTTCGAAAAATCAAAACATAGTTTCCTAACAAAGACTTTATT
CACTTTAACGTATGTTGAAGCAAAACAACAAAATTATGATGTTGCTTTGTCATACTTTAGGAAAGGGCGATTTATTGCCG
ATAAAAGTAATGATAAGGAATACTCAGCGAAATTCAAAATATTAGAGGGATTATTTTTTTCTGATGGTGATATTCAATTA
ATAAAGAATGCATTTTCATATCTGGCTTCGAGAAAAATGTTTGCTGATGTTGAAAATTTTTCAATTGAAGTCGCTGATTA
TTTTCATGAACAAGGAAATTTAATGCTCTCTAATGAATATTATCGTATGAGTATTGAAGCAAGACGAAAAATTAAAAAAG
GAGAGATTATTGATGAAAATCAGCCGGATTCTATTGGCAGCAGTGGTATTAGGTAG
TTGCGGGGTGTTTTCTTAGATAAAGATAAAATTCCGTACGACTTAGTCACGAAAAAATTAAATGAATGGTATACATCAAT
AAAAAATGATCAAGTTGAAAAAGCAGAGATTATAAAAACAGAAGTAGAGAAAGAATTGCTAAACATGGAAGAAAACCAAG
ATGCCCTTTTATATTATCAGCTATTAGAATTTAGACATGAGATAATGCTGAGTTATATGAAATCTAAGGAAATAGAAAAA
CTCCATAATGCTTATGAGACCATAAAAGAAATTGAAGAACAAGGGCAATTAACTGGCATGTTGGAATACTATTATTACTT
CTTTAAGGGAATGTACGAGTTTAGACGTAAAGAATTAACTACGGCAATAAGTGCCTATCGAATAGCTGAATCAAAGTTGT
CGGAAGTTGAGGATGAAATAGAAAAAGCAGAGTTTTTTTTCAAAGTGTCCTATGTATATTATTATATGAAACAAACGTAT
TTTTCCATGAATTATGCCAATCGGGCGTTAAAAATATTTAGAGAGTATGAAGAATATGCTGTCCAGACTCTGCGTTGTCA
ATTTATTGTAGCGGGAAACTTAATTGACTCATTAGAGTATGAATGCGCTTTGCAACAATTTTTAAATTCCTTGGAACTTG
CCAAGAAAAATAACATAGAGCATTTAATTGCAATGTCACACATGAATATTGGGATCTGTTATGATGAATTGAAGGAATAT
AAAAAGGCTTCACAACATTTAGTCTTAGCGTTAGAAATTTTCGAAAAATCAAAACATAGTTTCCTAACAAAGACTTTATT
CACTTTAACGTATGTTGAAGCAAAACAACAAAATTATGATGTTGCTTTGTCATACTTTAGGAAAGGGCGATTTATTGCCG
ATAAAAGTAATGATAAGGAATACTCAGCGAAATTCAAAATATTAGAGGGATTATTTTTTTCTGATGGTGATATTCAATTA
ATAAAGAATGCATTTTCATATCTGGCTTCGAGAAAAATGTTTGCTGATGTTGAAAATTTTTCAATTGAAGTCGCTGATTA
TTTTCATGAACAAGGAAATTTAATGCTCTCTAATGAATATTATCGTATGAGTATTGAAGCAAGACGAAAAATTAAAAAAG
GAGAGATTATTGATGAAAATCAGCCGGATTCTATTGGCAGCAGTGGTATTAGGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| rapF | Bacillus subtilis subsp. subtilis str. 168 |
38.525 |
93.606 |
0.361 |