Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   B34_RS03560 Genome accession   NZ_CP014793
Coordinates   659448..661271 (+) Length   607 a.a.
NCBI ID   WP_016885409.1    Uniprot ID   -
Organism   Bacillus licheniformis strain SCDB 34     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 654448..666271
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B34_RS03545 (B34_00728) - 655540..657114 (+) 1575 WP_016885411.1 alkaline phosphatase family protein -
  B34_RS03550 (B34_00729) - 657254..657727 (+) 474 WP_009328118.1 MarR family winged helix-turn-helix transcriptional regulator -
  B34_RS03555 (B34_00730) rcrP 657724..659451 (+) 1728 WP_016885410.1 ABC transporter ATP-binding protein Regulator
  B34_RS03560 (B34_00731) rcrQ 659448..661271 (+) 1824 WP_016885409.1 ABC transporter ATP-binding protein Regulator
  B34_RS03565 (B34_00732) - 661506..662720 (+) 1215 WP_016885408.1 cytochrome P450 -
  B34_RS03570 (B34_00733) - 662769..663485 (-) 717 WP_003182496.1 3-ketoacyl-ACP reductase -

Sequence

Protein


Download         Length: 607 a.a.        Molecular weight: 67253.61 Da        Isoelectric Point: 6.7022

>NTDB_id=149863 B34_RS03560 WP_016885409.1 659448..661271(+) (rcrQ) [Bacillus licheniformis strain SCDB 34]
MSQQPKHHGSIPKGMHKTKPKEFKKTLLRLARYLKPRTFQLVLVVFAAILATLFNVISPKLLGDATSSLFASFTEGTGVQ
FGFLGRITLILAGLYLLSALFTFLQQYLMAGVAQKTIYEMRQEVNEKLTRLPLKYYDKHSHGDTLSRAVNDIDNINTSLQ
QALTQMITSVITIVGIIVMMLLISPVLTLVVFITVPLSMLAVRFIASFSQKHFAAQQKELGDINGHVEEMFTGHQEVKAF
GHEEKAIQQFDEVNERLYQSGWKAQFISGLMMPMMTFIGNLGYVFVSITGGIFVLNGTLLIGGVQAFIQYTQQFSQPLVQ
AAGIANTIQSAIASAERVFSLLDEEEETGETPASIDTGKLKGDVSFEHVAFGYDKNVPVIRDLSLHAKEGQTIAIVGPTG
AGKTTIINLLMRFYELNKGSIKVGGTDISELSREQARSMFAMVLQDTWLFNGTIRENIAYGREGATEEDIIRAAKGAYAD
DFIRTLPDGYDTVLGEDAQNISQGQRQLLTIARAILADPKILILDEATSSVDTRTEMNIQKAMNKLMANRTSFVIAHRLS
TIKDADMILVMKNGDIIEKGSHEELLRKNGFYADLYNSQFSREEAVS

Nucleotide


Download         Length: 1824 bp        

>NTDB_id=149863 B34_RS03560 WP_016885409.1 659448..661271(+) (rcrQ) [Bacillus licheniformis strain SCDB 34]
ATGAGCCAACAACCAAAGCATCACGGCTCTATACCCAAAGGAATGCACAAGACAAAACCGAAAGAATTTAAAAAGACCCT
TTTGAGATTGGCCCGCTATTTAAAACCGCGGACCTTCCAGCTGGTGCTCGTTGTCTTCGCTGCAATATTGGCGACATTAT
TCAATGTCATCAGTCCAAAACTTCTCGGGGACGCGACCTCTTCCCTTTTCGCAAGCTTTACAGAAGGCACCGGTGTTCAA
TTCGGCTTTCTCGGCCGGATCACGCTGATCCTGGCAGGATTGTATCTGCTTTCTGCTTTGTTTACGTTCTTGCAGCAATA
CCTGATGGCCGGCGTAGCCCAGAAAACGATATACGAAATGCGCCAGGAAGTGAATGAAAAGCTGACGCGGCTCCCTTTAA
AGTACTATGACAAGCATTCGCACGGCGACACGCTCAGCCGCGCCGTCAATGATATTGACAATATTAATACATCACTGCAG
CAGGCGCTGACGCAAATGATTACATCTGTCATTACCATCGTCGGCATCATTGTCATGATGCTTCTCATCAGCCCTGTACT
GACGCTCGTCGTCTTCATCACGGTTCCGCTCAGCATGCTCGCTGTCCGATTTATAGCCTCATTTTCGCAGAAACACTTCG
CCGCGCAGCAAAAAGAACTCGGCGACATCAACGGACACGTTGAAGAAATGTTTACGGGGCATCAGGAAGTAAAGGCATTC
GGGCATGAAGAAAAAGCGATTCAGCAATTCGATGAAGTAAATGAGCGTCTTTACCAGTCAGGCTGGAAAGCGCAGTTTAT
TTCCGGTCTGATGATGCCGATGATGACATTCATCGGCAACCTCGGCTATGTGTTTGTCAGCATAACCGGCGGTATTTTCG
TTCTTAACGGCACCCTTTTGATCGGAGGCGTGCAGGCTTTTATCCAATATACGCAGCAATTTTCCCAGCCGCTCGTTCAA
GCTGCCGGAATCGCGAATACAATCCAATCGGCAATCGCATCCGCCGAAAGGGTGTTCAGTCTTTTGGACGAAGAAGAAGA
AACCGGGGAGACGCCGGCTTCCATCGATACCGGCAAATTAAAAGGCGATGTATCGTTTGAACATGTCGCCTTCGGTTATG
ATAAAAACGTTCCGGTCATCCGCGACTTAAGCCTTCACGCCAAAGAAGGCCAGACGATTGCGATCGTCGGACCGACCGGC
GCTGGAAAAACGACGATCATCAATTTGCTGATGCGTTTTTATGAACTAAACAAAGGCAGCATCAAGGTCGGCGGCACAGA
TATCAGCGAGCTGTCGCGTGAACAGGCGAGAAGCATGTTTGCGATGGTGTTACAGGACACATGGCTGTTCAACGGCACCA
TCCGGGAAAACATCGCTTACGGGCGTGAAGGCGCGACCGAAGAAGACATCATCAGAGCGGCAAAAGGCGCCTATGCCGAC
GATTTTATCCGCACCTTGCCGGACGGCTATGATACGGTACTTGGCGAAGATGCCCAAAACATCTCGCAAGGGCAACGGCA
GCTCTTAACGATCGCGAGAGCCATTTTAGCTGATCCGAAGATTTTAATATTAGATGAAGCGACAAGCAGTGTCGACACCC
GGACGGAAATGAATATTCAAAAAGCGATGAACAAACTGATGGCCAACCGTACGAGCTTTGTTATCGCCCACCGTCTTTCT
ACCATTAAAGATGCCGACATGATTCTTGTGATGAAAAACGGAGATATTATTGAAAAAGGCAGCCACGAAGAGCTGCTCCG
CAAGAACGGATTTTATGCCGATTTGTATAACAGCCAGTTCTCCCGGGAAGAAGCCGTCAGCTAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(42-318)

ABC transporter (ABC_tran)

(381-529)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

46.838

96.376

0.451