Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   A1R12_RS04025 Genome accession   NZ_CP014783
Coordinates   811286..813103 (+) Length   605 a.a.
NCBI ID   WP_015417048.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain B15     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 806286..818103
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A1R12_RS04010 (A1R12_04010) - 807070..807831 (+) 762 WP_014417219.1 MurR/RpiR family transcriptional regulator -
  A1R12_RS04015 (A1R12_04015) - 807848..809434 (+) 1587 WP_061890500.1 alpha-glucoside-specific PTS transporter subunit IIBC -
  A1R12_RS04020 (A1R12_04020) - 809572..811305 (+) 1734 WP_015239413.1 ABC transporter ATP-binding protein -
  A1R12_RS04025 (A1R12_04025) rcrQ 811286..813103 (+) 1818 WP_015417048.1 ABC transporter ATP-binding protein Regulator
  A1R12_RS04030 (A1R12_04030) - 813271..813675 (+) 405 WP_007408534.1 DoxX family protein -
  A1R12_RS04035 (A1R12_04035) - 813692..814549 (+) 858 WP_039252300.1 VOC family protein -
  A1R12_RS04045 (A1R12_04045) cyoE 814915..815862 (+) 948 WP_015417050.1 heme o synthase -
  A1R12_RS04050 (A1R12_04050) - 815900..816451 (-) 552 WP_012117104.1 PadR family transcriptional regulator -
  A1R12_RS04055 (A1R12_04055) - 816684..817286 (+) 603 WP_015417051.1 NAD(P)H-dependent oxidoreductase -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 67576.35 Da        Isoelectric Point: 9.5381

>NTDB_id=149628 A1R12_RS04025 WP_015417048.1 811286..813103(+) (rcrQ) [Bacillus amyloliquefaciens strain B15]
MQKDIRKPFRYPKIPLKSNEGGRKRAKAKDTKGTLRRIWSYVAEKKGLLTLVIIMVVISAIFGLLGPFVIGKAIDHFIVG
QTTDGLAGVLFILFGIYLVQSLSLWFQNYWMINISQSTVFKMRSELFTHLHELPIPFFDKQRLGDLMSRVTNDIENVSST
LNTSVIQVLSSVITFVGTIAVMLYMSPLLTLITLLIIPIMLLSIKWITNRTGLLFKQQQKNLGELNGFIEESISGAKVIK
AYSREDRVMEQFLEKNAALQSSGFWAQTISGFIPKVMNSLNNLSFTIIAAVGGLFALKGWISIGSIVVFAEYSRQFTRPL
NDLANQFNTMLSAIAGAERVFDVLDEKEEREDEEHALYQPIKTGEIEFRDVSFGYHEDSPILKHLSFSVPKGQSIAFVGP
TGAGKTTITSLIARFYEPNNGKILIDGTDIKKLTRSSLRKNMGFVLQDSFLFQGTIRENIRYGRLDASDKEVEEAAKAAN
AHGFIERLPKGYDTVLTQNGAGISQGQKQLISIARAVLADPVLLILDEATSNIDTVTEVKIQEALGRLMAGRTSVIIAHR
LNTIQKADQILVLKDGEMAEKGTHAELLSQNGFYRELYESQFREL

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=149628 A1R12_RS04025 WP_015417048.1 811286..813103(+) (rcrQ) [Bacillus amyloliquefaciens strain B15]
ATGCAAAAAGACATTCGTAAACCTTTCCGATATCCGAAAATACCGCTCAAATCAAATGAAGGCGGCAGAAAACGCGCGAA
AGCAAAAGATACAAAAGGCACGCTGCGCAGAATCTGGTCTTATGTAGCCGAGAAAAAAGGGCTTTTAACCCTTGTGATCA
TCATGGTAGTCATAAGCGCCATATTCGGCCTGCTCGGACCGTTCGTCATCGGGAAAGCGATTGATCATTTTATCGTCGGG
CAGACGACAGACGGATTGGCGGGGGTGCTGTTCATCCTGTTTGGGATTTACCTCGTGCAATCATTGTCCTTATGGTTTCA
AAACTATTGGATGATCAATATCTCGCAAAGCACCGTGTTTAAAATGCGGAGCGAGCTGTTTACCCATCTGCATGAGCTGC
CGATTCCGTTTTTTGATAAACAGCGGCTCGGGGACTTAATGAGCCGGGTCACCAATGATATCGAAAATGTCAGCTCCACT
TTAAATACATCCGTCATTCAAGTGCTGTCGAGCGTCATTACATTCGTCGGCACAATCGCCGTCATGCTGTACATGAGTCC
GCTTTTAACATTGATCACGCTTTTGATTATTCCGATCATGCTTTTGAGCATTAAATGGATCACCAACCGGACGGGATTGC
TTTTTAAGCAGCAGCAGAAAAACCTCGGCGAGCTGAACGGTTTTATTGAAGAGTCGATATCAGGGGCGAAGGTCATTAAA
GCCTATTCGAGGGAAGACCGCGTCATGGAACAATTTTTAGAAAAAAACGCGGCGTTACAATCATCGGGGTTTTGGGCGCA
GACAATTTCGGGATTCATTCCGAAAGTCATGAACTCTTTAAACAATTTAAGCTTTACGATTATAGCGGCGGTCGGCGGGC
TGTTTGCGCTGAAGGGATGGATTTCAATCGGTTCCATCGTCGTATTCGCCGAATATTCGCGGCAGTTCACGCGCCCTTTA
AATGATTTAGCCAATCAGTTCAATACGATGTTATCGGCCATCGCCGGGGCTGAACGGGTGTTTGACGTGCTTGATGAAAA
AGAGGAGCGGGAAGATGAAGAGCATGCGCTGTACCAGCCGATCAAAACGGGAGAGATTGAATTCCGAGATGTCTCCTTCG
GCTATCATGAAGACAGCCCGATCTTAAAACACCTGTCCTTCAGCGTTCCGAAAGGACAGTCCATCGCCTTCGTCGGACCG
ACCGGAGCGGGTAAAACAACCATTACGAGCCTGATCGCCCGTTTTTACGAGCCGAATAACGGAAAAATCCTCATTGACGG
AACGGACATCAAAAAACTGACGAGATCCAGTCTGAGAAAAAACATGGGGTTTGTCCTGCAGGATTCCTTTCTCTTTCAGG
GCACCATCAGGGAAAATATTCGCTACGGCCGTCTGGATGCTTCTGACAAAGAGGTGGAGGAAGCCGCAAAAGCCGCCAAT
GCCCACGGGTTCATCGAACGGCTCCCGAAAGGCTATGATACTGTTCTTACCCAAAACGGCGCGGGCATCAGCCAAGGACA
AAAACAGCTCATTTCCATCGCGAGAGCTGTGCTGGCAGACCCGGTGCTGCTCATTTTGGATGAAGCGACGAGCAACATTG
ACACAGTGACCGAAGTGAAAATACAAGAAGCGCTCGGCCGTTTAATGGCGGGCAGAACAAGCGTCATCATCGCTCACAGG
CTGAACACGATTCAAAAAGCGGATCAGATTCTTGTGCTGAAAGACGGCGAAATGGCTGAAAAAGGAACCCATGCCGAACT
TCTCAGCCAGAACGGGTTTTACCGGGAATTATATGAAAGCCAGTTCCGGGAATTATAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(49-320)

ABC transporter (ABC_tran)

(382-531)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

38.593

96.364

0.372

Multiple sequence alignment