Detailed information NTG0149537

Bioinformatically predicted

Overview

• Name: recJ
• Type: Machinery gene
• Locus tag: AB434_RS15875
• Genome accession: NZ_CP011939
• Coordinates: 3266035..3268398 (-)
• Length: 787 a.a.
• NCBI ID: WP_035184524.1
• Uniprot ID: -
• Organism: Heyndrickxia coagulans strain S-lac
• Function: homologous recombination (predicted from homology) Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IS/Tn	3268766..3270181	3266035..3268398	flank	368

Gene organization within MGE regions

Location: 3266035..3270181

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB434_RS15875 (AB434_3617)	recJ	3266035..3268398 (-)	2364	WP_035184524.1	single-stranded-DNA-specific exonuclease RecJ	Machinery gene
AB434_RS15880 (AB434_3618)	-	3268766..3270181 (-)	1416	WP_014095994.1	ISLre2-like element ISBco6 family transposase	-

Sequence

Protein

• Length: 787 a.a.
• Molecular weight: 87964.94 Da
• Isoelectric Point: 5.5794

>NTDB_id=149537 AB434_RS15875 WP_035184524.1 3266035..3268398(-) (recJ) [Heyndrickxia coagulans strain S-lac]
MLQSRTRWRVPEMDPKAAATISQQLNVSPLVSKLLVNRGITDVEEARSFLFHEGLAYYDPFLLHDMEKAAARIREAIKKE
EPVLVFGDYDADGVTSTAIMMAALNDLGAHAEFYIPDRFKEGYGPNEAAFRRAAEEGFQLIITVDTGIAAVHEAEVAREL
GITLIITDHHEPGPVLPEAFAIVHPKHPESTYPFRELSGAGVAFKVAHALYGKVPEQLEDLAAIGTVADLVPLLDENRLI
AINGIKRLRTTKRAGLVALCRCADIRQEEINEETIGFVLAPRLNAAGRLQHAAPAAELLMTEDTEEAGMLAETIDGLNKE
RQKIVNDMTNEAIELVEEEVEKGARVLVVGKEGWNAGVIGIAASRLTERFYRPAIVLSFDPETGLAKGSARSIDGFHMFN
ELSKCRDILPHFGGHPMAAGMTLSLSDVEELRRRLNEQAAALPDEMFVPVTNISAEISIEEAGMEAIREMALLSPFGTAN
PKPLLLLDGAECPQIRAIGADGKHLKLTLSKNGTTLDGIGFGLGNLAPHISPSACISVVGELSINEWNNIRKPQMMVKDI
KITNWQLFDFRGNRPLKQWARYVPEEDQAFVVFQKETLRNLPLPDFSVRLVSVATMEEARAFDPSNKNIVFLDLPKGPRM
MAALLEGGSPARIYAYFYHAGNHFFSTFPTREHFKWFYAFLAKRKTFNLKQHGDELAAYRGWSRNTIDFISQVFFELDFV
TIKDGFISLKAAKQKRDLKESLTYQKKLAQYQMEKDLLYSSFQELKMWFDQMIKPAVQYEEETAKWI

Nucleotide

• Length: 2364 bp

>NTDB_id=149537 AB434_RS15875 WP_035184524.1 3266035..3268398(-) (recJ) [Heyndrickxia coagulans strain S-lac]
ATGCTGCAGTCAAGAACAAGATGGCGGGTGCCGGAAATGGATCCAAAAGCAGCCGCAACGATCTCGCAACAATTGAACGT
TTCGCCACTTGTTTCAAAATTGCTTGTAAACCGCGGCATAACGGATGTTGAAGAAGCGCGGTCTTTTTTATTCCATGAAG
GGCTAGCGTATTATGATCCGTTTTTGCTGCATGATATGGAAAAAGCAGCGGCCCGCATCCGCGAAGCGATTAAAAAAGAA
GAACCGGTTCTCGTCTTCGGCGATTACGATGCGGACGGCGTAACGAGTACTGCCATCATGATGGCCGCTTTAAACGATCT
TGGCGCCCATGCTGAATTTTATATCCCGGACCGGTTTAAAGAAGGGTATGGGCCAAATGAAGCGGCTTTCCGCCGGGCGG
CTGAAGAGGGTTTTCAGCTAATCATTACCGTTGATACCGGTATTGCCGCTGTCCACGAAGCGGAAGTGGCCCGCGAACTC
GGGATCACGCTCATTATTACGGACCATCACGAACCTGGGCCGGTATTGCCGGAAGCCTTTGCCATCGTCCATCCGAAGCA
TCCGGAAAGTACATACCCGTTCCGGGAACTGTCGGGCGCAGGCGTCGCTTTTAAAGTCGCCCATGCGCTGTACGGCAAAG
TGCCGGAACAGCTTGAAGATTTGGCCGCTATCGGGACGGTCGCGGATCTTGTGCCGCTTCTGGACGAAAACCGGCTGATT
GCCATAAACGGCATCAAACGGTTGAGAACGACAAAGCGGGCGGGGCTTGTGGCGCTGTGCCGGTGTGCGGATATCCGCCA
GGAAGAGATCAATGAAGAAACCATCGGCTTTGTGCTCGCCCCCCGCTTAAATGCAGCCGGGCGCCTGCAGCATGCGGCAC
CGGCAGCGGAACTGCTAATGACCGAAGACACAGAAGAAGCCGGGATGCTCGCTGAAACGATTGACGGGCTCAATAAAGAA
CGGCAAAAAATCGTAAACGACATGACAAATGAAGCAATCGAACTGGTGGAAGAAGAAGTGGAAAAGGGGGCGCGTGTCCT
TGTTGTCGGGAAAGAAGGCTGGAATGCCGGCGTAATCGGCATTGCCGCCTCGCGCCTTACAGAACGCTTTTACCGGCCTG
CGATTGTGCTCAGCTTTGACCCGGAAACAGGGCTGGCAAAAGGATCGGCGCGCAGCATTGACGGCTTCCATATGTTTAAC
GAATTATCGAAATGCAGGGATATTTTGCCGCATTTTGGCGGGCATCCGATGGCGGCGGGGATGACGCTTTCTTTATCCGA
TGTGGAGGAACTGCGGCGCCGGCTGAACGAACAGGCCGCGGCATTGCCGGACGAGATGTTTGTGCCGGTTACGAACATCA
GCGCTGAAATTTCCATAGAAGAAGCGGGGATGGAAGCGATCCGCGAAATGGCATTGCTCTCGCCGTTTGGCACGGCGAAT
CCGAAGCCGCTTCTGTTGCTGGACGGGGCCGAATGCCCGCAAATCCGGGCGATCGGCGCAGACGGGAAACATTTGAAATT
GACGCTTTCTAAAAACGGCACAACGCTCGATGGGATCGGCTTCGGGCTCGGGAATCTTGCCCCGCATATTTCCCCTTCTG
CCTGCATATCGGTTGTCGGGGAGCTGTCCATCAACGAATGGAACAATATCCGTAAGCCGCAAATGATGGTGAAGGATATC
AAAATCACAAACTGGCAATTGTTTGATTTCAGGGGCAACAGGCCTTTAAAGCAATGGGCACGGTACGTCCCGGAAGAAGA
CCAGGCTTTTGTTGTCTTCCAAAAAGAAACATTGCGGAACCTGCCGCTGCCGGATTTTTCCGTCCGCCTTGTGTCGGTTG
CGACAATGGAAGAGGCAAGGGCATTTGATCCTTCAAATAAAAACATTGTGTTTCTGGATCTTCCGAAAGGCCCGCGGATG
ATGGCGGCACTGCTTGAGGGCGGTTCGCCGGCCAGGATTTATGCGTATTTTTACCATGCCGGGAACCACTTTTTCAGCAC
GTTCCCGACACGCGAACATTTTAAATGGTTTTACGCTTTTCTTGCAAAAAGGAAAACGTTCAACCTAAAGCAGCACGGGG
ATGAGCTGGCGGCTTATCGCGGCTGGTCGAGAAATACCATCGATTTTATTTCGCAGGTGTTTTTTGAACTTGATTTTGTT
ACAATAAAGGATGGATTTATTTCCCTGAAAGCAGCCAAACAAAAACGCGATTTAAAGGAATCTCTTACGTATCAAAAAAA
ACTAGCACAATATCAAATGGAAAAGGACCTGCTGTACTCATCTTTCCAGGAGCTGAAGATGTGGTTTGACCAAATGATCA
AGCCTGCTGTACAGTATGAGGAGGAAACAGCAAAATGGATTTAA

Domains

Predicted by InterproScan.

• DHH family (DHH) (83-226)

• DHHA1 domain (DHHA1) (315-438)

• Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C) (566-769)

• RecJ OB domain (RecJ_OB) (454-559)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recJ	Bacillus subtilis subsp. subtilis str. 168	52.859	100	0.529